Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00449 ATGTCTTCTTCCTCCAATGAACTCATCCTCACTAGCTCCCCTGACGGGCCAATCATGGTCTACGAGACTGTTAGCCGCGCCGCCGTGACACGGTTCTCCAGCAGCCGATCTCCGTGTCGCGGCCTGACCATGGTGGGCCGGAGATTGTTGGCAGCCTCACACGTATCATCAGACACGGGTGCAGGCTCCATCAACATCTACAATTGGCACGGTTCTTCTGTGTTTCGTAACTTCCCCGTGCCAGAACCCATTGCTCCTCTCATTGCAACACCGGATGGAGCATTTCTCTTCGGTGGTGGCATCTCAGGGAGTGTTCTATCTCTTTCAGGTTCTTCTGGGGATGTCATCAGATCAACTGTTGTTCACTCAAGTCCAGTTTCCAGTCTTCATCTGAGCGACGATGGGTCACTTGTTATCTCAGGCAGTGAAGATGGAACAGTTGTTATTGTTCCTAGCTTCAAGATCGTTGCTGAGGGTTCCTTGGAGGAGAATGTGGAAGACTTGATCTTGCACAAATGGAAGGCACATTCTGATTCCGTGACTGCTTTCAAGTCAGTGATGGGTACTTTGGTTTCTTGCTCATTAGACCGAACATGCAAGTTTTGGAATCTGGAAAACTGTGGGGTCCTTATGCAGACTGTGACATTACCTTGTTCCGTTTCTGGGGTTGCCGTAGATTCATCGGGGTCAACGTTTTACGCCGGTGGTGCAGATGGGTTTGTTTATAATGGGCCGGGGAAGGTTGAAAGTAGAAAAGAAGTGGGTGATAAGGGTTGTAATAAGGTGAGAAAATGGGGTCAAAAGCATAGTGGGAGCATTGTGTCATTGGCTTTGGTGAAGGAAGAGAGGAATGTGGTGTCTGCTGCAGAAGATGGGAGTGTGTGGATGTGGGATGTTGAGAAAGGAGAAGTTGTGATGGTTTTTGGGGATGAATTGATAACTATCAGTGACATGATTGTGATAAAGGGAAATGGTGGTGGGTTTGGAGTTGGAAATGGAAATGATGTTGCAGTTGATGAAGGGAATGGGTCTTTCACTTGTTCTAGGTTATGTGAAGAAGAGATTCTTAGGACAATGAATGAAATGACAGCCCTTGGGGAGGTCAAAGATGTTGTATTACAAGACAGGAAAAAGGCCATTGAAATGTTGGAATCTGTGATTGAAATGTATGAGAGACTTTTGAAGCTTATCCTTAAGGAAGCTACAGAAGCCATTGAAGAAGAAGAAGAAGAAATGGATGAAGAAGACAAAGATGATGAACATGAAGAAGAACACCAGAAAGATGATAAGAAGGAAGGAACTAGTACTTTTGGTCGTCAATGTACTGCAGAAACATGA 1338 0.4581 MSSSSNELILTSSPDGPIMVYETVSRAAVTRFSSSRSPCRGLTMVGRRLLAASHVSSDTGAGSINIYNWHGSSVFRNFPVPEPIAPLIATPDGAFLFGGGISGSVLSLSGSSGDVIRSTVVHSSPVSSLHLSDDGSLVISGSEDGTVVIVPSFKIVAEGSLEENVEDLILHKWKAHSDSVTAFKSVMGTLVSCSLDRTCKFWNLENCGVLMQTVTLPCSVSGVAVDSSGSTFYAGGADGFVYNGPGKVESRKEVGDKGCNKVRKWGQKHSGSIVSLALVKEERNVVSAAEDGSVWMWDVEKGEVVMVFGDELITISDMIVIKGNGGGFGVGNGNDVAVDEGNGSFTCSRLCEEEILRTMNEMTALGEVKDVVLQDRKKAIEMLESVIEMYERLLKLILKEATEAIEEEEEEMDEEDKDDEHEEEHQKDDKKEGTSTFGRQCTAET 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00449 445 Coils Coil 380 425 - -
Vimu5g00449 445 Gene3D - 1 149 IPR015943 GO:0005515
Vimu5g00449 445 ProSitePatterns Trp-Asp (WD) repeats signature. 285 299 IPR019775 -
Vimu5g00449 445 Gene3D - 155 242 IPR015943 GO:0005515
Vimu5g00449 445 MobiDBLite consensus disorder prediction 405 422 - -
Vimu5g00449 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 307 IPR001680 GO:0005515
Vimu5g00449 445 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 303 - -
Vimu5g00449 445 Pfam WD domain, G-beta repeat 116 149 IPR001680 GO:0005515
Vimu5g00449 445 Pfam WD domain, G-beta repeat 170 203 IPR001680 GO:0005515
Vimu5g00449 445 SMART WD40_4 258 298 IPR001680 GO:0005515
Vimu5g00449 445 SMART WD40_4 207 243 IPR001680 GO:0005515
Vimu5g00449 445 SMART WD40_4 112 151 IPR001680 GO:0005515
Vimu5g00449 445 SMART WD40_4 166 203 IPR001680 GO:0005515
Vimu5g00449 445 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 4 303 IPR011047 -
Vimu5g00449 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 149 IPR001680 GO:0005515
Vimu5g00449 445 MobiDBLite consensus disorder prediction 405 445 - -
Vimu5g00449 445 PANTHER WD-REPEAT PROTEIN 18 6 401 IPR045227 -
Vimu5g00449 445 Gene3D - 250 314 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00449 99 308 U-box Gene Family AT1G04510 29.439 4.29e-08 53.5