Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00438 ATGAAGATTCAGTGCAACGTGTGCGAAGCTGCGGAGGCCAAGGTCCTCTGTTGTGCAGACGAAGCCGCACTTTGCTTGGAATGCGATGAAAAGGTTCACGCCGCAAACAAGCTCGCCACCAAGCACCAAAGAGTCCCCCTTTCTCTCTCTGCTTCCCACGTCCCAAAGTGTGACATATGTCAGGAAATGGTTGGTTATTTCTTCTGTTTAGAGGATCGGGCTTTGCTATGTAGGAATTGTGATGTATCTATTCACACTGTTAATGCCTGTGTCTCTGGTCATCAGAGGTTTTTGCTTACTGGTGTGAGAGTAGGCCTTGAAGCTACTGAGCCCGGTGCTTCCTCGTCCTCTGTCAAATCACAATCTGGGGAGAAAACATCTGATGCTAAATCTTCATCCATCTCCAGAAACGTTTCCTCCATGCCACAGCCACCAAATTTTAATGAAGTGTTTCCCTCCGAAATGGGAGGAGTTGAGGACTTTCCACCAAACTATGGTGGCGGTTATACTGCTGGAAACATCTCACAATGGCCCATGGAAGAATTTCTCGGGTTAAATGAATTCAGTCAGTATTATAACTATATGGATGGATCATCTAAGGCTGACAGTGGTAAACTTGGGGATTCTGATTCATCTGTTTTGAGGTCTAGTGAAGAGGAAATTGATGATGACGGCTTCTTGGGGCGTGTTCCAGATTCATCCTGGACAGTTCCTCAAATCCCTTCCCCTCCTACGGCTTCCGGATTACACTGCCCGGAACTCCGGCGATATACATCTGACAATGCTATGTTTGTTCCTGACATATGCTTTTCCGGCGAGCGGAGGCAGCCTCGCCGTGTTCTTCATCATTCTATTCATTCAAAACGGCGGAGGAACCTATAA 882 0.4717 MKIQCNVCEAAEAKVLCCADEAALCLECDEKVHAANKLATKHQRVPLSLSASHVPKCDICQEMVGYFFCLEDRALLCRNCDVSIHTVNACVSGHQRFLLTGVRVGLEATEPGASSSSVKSQSGEKTSDAKSSSISRNVSSMPQPPNFNEVFPSEMGGVEDFPPNYGGGYTAGNISQWPMEEFLGLNEFSQYYNYMDGSSKADSGKLGDSDSSVLRSSEEEIDDDGFLGRVPDSSWTVPQIPSPPTASGLHCPELRRYTSDNAMFVPDICFSGERRQPRRVLHHSIHSKRRRNL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00438 293 MobiDBLite consensus disorder prediction 212 227 - -
Vimu5g00438 293 CDD Bbox1_BBX-like 5 47 - -
Vimu5g00438 293 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Vimu5g00438 293 FunFam B-box zinc finger protein 22 1 93 - -
Vimu5g00438 293 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vimu5g00438 293 MobiDBLite consensus disorder prediction 199 251 - -
Vimu5g00438 293 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Vimu5g00438 293 SMART bboxneu5 52 99 IPR000315 GO:0008270
Vimu5g00438 293 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vimu5g00438 293 Gene3D Classic Zinc Finger 1 92 - -
Vimu5g00438 293 MobiDBLite consensus disorder prediction 110 155 - -
Vimu5g00438 293 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 269 - -
Vimu5g00438 293 MobiDBLite consensus disorder prediction 110 147 - -
Vimu5g00438 293 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00438 Vimu-Chr5 4269320 4274407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00438 1 268 C2C2-CO-like Transcription Factor Family AT1G78600 48.377 7.42e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu5g00438 zf-B_box 2.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00438 5 4269320 4274407 Vimu5g00438 5 4269320 4274407 ECH