Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu5g00437 | ATGAGAAGAGTGGCCCTTGCGCTGCTCAAACAAGTTTACCCTTTGCGCAGCCACAATGCACGGCGCTCGTTCAGCACATTCCTCCCTCCGCCGCGCGAGGTGGTGGAACCCTTCTGCAACCTCTCCGACGTCGTTTCCTCCCCTCAAACCTCTCCGTGGGTTCCTCAAATTATCTCCCTCCTCGACGGCTCTCCCTCCATGGAGTCCAACCTCGACTCCTTCTGCCGCCAATACCTCATCTCTCTCTCCCCCGCCTTCGTTTCCCACACGCTCCACTCCCTCTCCGACCCTCTCACCGCCACGCGCTTCTTCTCCTGGGCCGCCACACAGCCCAACTACACCCATTCCCTCGACTGCCACGTGTCCCTCCTCCCCCTCCTGCCCCCCTCCTCCCTCCCCGCCGCTGTCGCCAGCCTCCGCCGCGCCAACCTCCCTATCACCCTCCCGGCTGCCCACTCCCTCGCCAAAACCCTAGCCTCCGCCGGCCTCATCCATGATCTCCTCTGGCTGTTTCGCGCCATGAAGACCAACAACCTCCCTCTCTCCCTCATCATCCTCAACTCCCTCCTCAACGCCCTCGTCAACGCCTCCCTCGTCGACTCCGCCGAGCGCGTGTTCAAATCAATGCAGGAAGGCGCGTCACCCAAGCCCGACGTCGTCAGTTACAACACGCTCGTCAAAGGCTACTGCAAGGTCGGGCGAACGCGGGACGCGTTCGCCATGCTTCGCGAAATGGAGGCTGAAAACGTGCCACCCGATGAGGCCACGTACATGACCCTGATGCAGGCGTGTTACAATGAGGGTGACATAGATTCGTGCGTGAGGCTTTACCATGAGATGGAGGAGGATGAAGTGTTGGTGACGAAAATCCCTTCTCACGCGTATAGTTTAACAATATGTGGTTTGTGTAAGCAGGGGAAGGTTATGGAGGGTTGTTTTGTGTTTGAGAGTATGATTAAGAAAGGTTGTGTGGCTCACAAGGCTGTGTATACTGCCATGATTGATGGTTATGCCAAGAGCGGGAACATGGATGCGGCGCTCTCGTTTTTGGAGAGGATGAAGGTGGATGGAGTTGAGCCTGATGAGGTTACTTATGGTGCTGTTGTAGGTGGTTTGTGCAAGAGTGGGAAAGTGGAGGAGGCCATGGGTTATTTTAGGTTTTGTAAGGGTAATGGGATGGGTGTGAATGCTGTGTTTTATTCGAGTTTGATTGATGGGCTTGGGAAGGTCGGGAGGGTGGATGAGGCGGAGAGGTTGTTTGAGGAGATGGCGGAAGTGGGGTGTCCACCGGATTCATATTGTTACAATGCTCTGATGGATGGTTTGTGCAAGAGTGGGAGGGTTGATGAGGCTCTGATGTTGTTTAGGCGGATGGAGCAAGATGGGTGTGAGCAGACTATTTATACTTTTACTATACTTATCAGTGAGCTCTTCAAGGAGAGGAGGAACGAGGAGGCGCTGAAGCTGTGGGAGGAGATGATCGACAAAGGTGTCACGCCGAATGCTGCATGTTTCAGGGCTCTTTCAATTGGGCTGTGTCTTTCAGGGAAGGTTGCAAGGGCCTGCAGGGTGTTGGATGAGCTTGCCCCGATGGGGATTGTTCTTGAGAGAGCCTATGAGGACATGATTGGTGTGCTGTGCAAGGCTGGTCGTGTGAAGGAGGCCTGCAAGTTGGCTGATGGGATTGTGGATAGGGGTAGGGAAATACCAGGAAAGGTTCGGACTGTGCTGATCAATGCCTTGAGGAAGGCTGGTAATGCGGATTTGGCGATTAAGTTAATGCACAGCAAGATTGGTATTGGGTATGATCGAATGCGGAGTGTTAAAAAGCGAGTGAAGTTCCAAACCCTCGTCAACAGCTGA | 1863 | 0.5448 | MRRVALALLKQVYPLRSHNARRSFSTFLPPPREVVEPFCNLSDVVSSPQTSPWVPQIISLLDGSPSMESNLDSFCRQYLISLSPAFVSHTLHSLSDPLTATRFFSWAATQPNYTHSLDCHVSLLPLLPPSSLPAAVASLRRANLPITLPAAHSLAKTLASAGLIHDLLWLFRAMKTNNLPLSLIILNSLLNALVNASLVDSAERVFKSMQEGASPKPDVVSYNTLVKGYCKVGRTRDAFAMLREMEAENVPPDEATYMTLMQACYNEGDIDSCVRLYHEMEEDEVLVTKIPSHAYSLTICGLCKQGKVMEGCFVFESMIKKGCVAHKAVYTAMIDGYAKSGNMDAALSFLERMKVDGVEPDEVTYGAVVGGLCKSGKVEEAMGYFRFCKGNGMGVNAVFYSSLIDGLGKVGRVDEAERLFEEMAEVGCPPDSYCYNALMDGLCKSGRVDEALMLFRRMEQDGCEQTIYTFTILISELFKERRNEEALKLWEEMIDKGVTPNAACFRALSIGLCLSGKVARACRVLDELAPMGIVLERAYEDMIGVLCKAGRVKEACKLADGIVDRGREIPGKVRTVLINALRKAGNADLAIKLMHSKIGIGYDRMRSVKKRVKFQTLVNS | 620 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu5g00437 | 620 | Gene3D | Tetratricopeptide repeat domain | 386 | 458 | IPR011990 | GO:0005515 | |
| Vimu5g00437 | 620 | Gene3D | Tetratricopeptide repeat domain | 536 | 597 | IPR011990 | GO:0005515 | |
| Vimu5g00437 | 620 | Gene3D | Tetratricopeptide repeat domain | 459 | 532 | IPR011990 | GO:0005515 | |
| Vimu5g00437 | 620 | Gene3D | Tetratricopeptide repeat domain | 321 | 385 | IPR011990 | GO:0005515 | |
| Vimu5g00437 | 620 | Gene3D | Tetratricopeptide repeat domain | 134 | 293 | IPR011990 | GO:0005515 | |
| Vimu5g00437 | 620 | SUPERFAMILY | HCP-like | 330 | 528 | - | - | |
| Vimu5g00437 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 431 | 465 | IPR002885 | - | |
| Vimu5g00437 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 326 | 360 | IPR002885 | - | |
| Vimu5g00437 | 620 | Pfam | PPR repeat family | 396 | 444 | IPR002885 | - | |
| Vimu5g00437 | 620 | Pfam | PPR repeat family | 217 | 265 | IPR002885 | - | |
| Vimu5g00437 | 620 | Pfam | PPR repeat family | 329 | 374 | IPR002885 | - | |
| Vimu5g00437 | 620 | Pfam | PPR repeat family | 472 | 513 | IPR002885 | - | |
| Vimu5g00437 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 218 | 252 | IPR002885 | - | |
| Vimu5g00437 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 466 | 500 | IPR002885 | - | |
| Vimu5g00437 | 620 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 293 | 533 | - | - | |
| Vimu5g00437 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 396 | 430 | IPR002885 | - | |
| Vimu5g00437 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 361 | 395 | IPR002885 | - | |
| Vimu5g00437 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 291 | 325 | IPR002885 | - | |
| Vimu5g00437 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 253 | 287 | IPR002885 | - | |
| Vimu5g00437 | 620 | Pfam | PPR repeat | 186 | 211 | IPR002885 | - | |
| Vimu5g00437 | 620 | Pfam | PPR repeat | 542 | 563 | IPR002885 | - | |
| Vimu5g00437 | 620 | Pfam | PPR repeat | 294 | 323 | IPR002885 | - | |
| Vimu5g00437 | 620 | NCBIfam | pentatricopeptide repeat | 256 | 285 | IPR002885 | - | |
| Vimu5g00437 | 620 | NCBIfam | pentatricopeptide repeat | 363 | 386 | IPR002885 | - | |
| Vimu5g00437 | 620 | NCBIfam | pentatricopeptide repeat | 186 | 211 | IPR002885 | - | |
| Vimu5g00437 | 620 | NCBIfam | pentatricopeptide repeat | 329 | 362 | IPR002885 | - | |
| Vimu5g00437 | 620 | NCBIfam | pentatricopeptide repeat | 468 | 502 | IPR002885 | - | |
| Vimu5g00437 | 620 | NCBIfam | pentatricopeptide repeat | 298 | 324 | IPR002885 | - | |
| Vimu5g00437 | 620 | NCBIfam | pentatricopeptide repeat | 433 | 464 | IPR002885 | - | |
| Vimu5g00437 | 620 | NCBIfam | pentatricopeptide repeat | 400 | 432 | IPR002885 | - | |
| Vimu5g00437 | 620 | NCBIfam | pentatricopeptide repeat | 220 | 254 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu5g00437 | 156 | 602 | Glycosyltransferase | AT1G05670 | 28.512 | 3.81e-51 | 186 |