Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00434 ATGGAAATATCAAATGATTCAGGTACTAAGAAACCAAAAAGGCTAACATCGGTTGTTTGGAATCACTTTGAAAGGGTTAGAAAGGCTGACATCTGCTATGCTGTTTGTGTGCATTGTAACAAGAGACTTAGTGGATCAAGTAACAGTGGAACTACTCATCTGAGAAATCACTTGATGCGGTGTTTGAAAAGATCAAATTTTGACGTGTCTCAATTACTTGCTGCAAAGAGAAGGAAGAAAGATAATACCATCAGTCTAGCAAACATTAGTTTTGATGAAGGTCAGAGGAAAGAAGAATACATAAAGCCAACGATTATCAAGTTTGAACAGGAGCATAAGAAGGATGATATCATTAGCTTCGGAAGTAGTAAATTTGATCAGGAAAGGAGTCAACTTGATCTTGCACGCATGATCATATTACATGGATACCCATTGAGCTTGGTTGAACAAGTAGGATTCAAGGTCTTTGTGAAGAACCTCCAGCCTCTCTTTGAGTTCATGCCAAACAGTGCTGTAGAGATTTCTTGTATAGATATCTATAGGAGGGAGAAAGAGAAAATGTATGATATGATAAACAAACTACAAGGTAGAATTAATCTGTCTATTGAAATGTGGTCTTCAGCAGAAAATTCTTCGTATTTATGCTTGTCTGCTCATTATATTGACGAGGAATGGACATTACAGAAGAAAATCTTGAACTTTGTCACACTTGATTCTTTACATACTGAAGACTTACTTCCAGAAGTGATTATCAAATGTCTCAATGAATGGGATATTGATGGCAAGCTTTTTGCCTTGACACTTGATGATTGTTCCATCGATGATGACATCACCCTTAGAATAAAGGAGCGAGTTTCTGAGAAAAGACCTTTCTTAAGTACTCGTCAGTTACTTGACATACGCTCAGCAGCACATCTCATAAATTCCATTGCTCAAGATGCCATGGATGCATTACAGGAAGTGATCCAAAAGATTCGAGAGAGTATCAGATATGTTAGAAGTTCACAATTAGTGCAGGCAAAATTTAATGAAATTGCTCAGCATGCTACAGTTAACACGCAGAAGGTGTTGTTTCTTGATTTTCCTGTTCAGTGGAAGTCTACATATCTCATGCTTGAAACTGCGGTAGAATACAGGAGTGTTTTTTCTCTCTTCCAAGATCACGATCCCTCTTATTCATCAACACTGACTGATGAAGAGTGGGAATGGGCCACTTCAGTTACTGGATACTTAAAACTTTTAGTTGAAATTACAAACGTATTTGCGGCCAACAAATTTCCTACTGCTAATATATATTTCCCTGAGATTTGTGATGTCCATATTCAATTAATTGATTGGTGCAGAAGTTCAGATAGTTTTCTTAGTCCCATGGCTTTGAAGATGAAAGCCAAATTTGACAAGTACTGGAGCAAGTGCAGTTTAGCTTTAGCTCTCGCTGCTGTTCTAGATCCTCGGTTTAAAATGAAATTGGTTGAGTACTACTACTCCCTGATTTATGGCAGCACTGCTCTGGAGCGTATCAAGGAAGTTTCTGATGGTATCAAAGAACTTTTTAACGCGTATTCTATTTGTTCAACTATGATTGATCAAGGCTCAGCCTTGCCTGGTAGCAGTTTGCCTAGTACTAGTTGTAGTTCCAGAGACAGGCTAAAAGGCTTTGACAGATTCCTTCACGAGACATCACAGAACCAGTCTATGACATCAGACTTGGACAAGTATTTAGAGGAACCAATCTTTCCACGTAATTCTGATTTTAACATATTGAACTGGTGGAAAGTCCACATGCCAAGGTACCCAATTTTGTCTATGATGGCACGTGATGTTCTAGGGACTCCAATGTCAACTTTGGCACCGGAATTGGCCTTTGGCACTGGGGGCAGAGTGCTAGATTCTTCTCGTAGTTCACTAAACCCAGATACAAGAGAGGCTTTGATATGTACCCAAGATTGGCTCCGAAATGAATCTGGAGGTATGTACTTATCTTCTACCCTTTTCCAACCATAG 2004 0.3892 MEISNDSGTKKPKRLTSVVWNHFERVRKADICYAVCVHCNKRLSGSSNSGTTHLRNHLMRCLKRSNFDVSQLLAAKRRKKDNTISLANISFDEGQRKEEYIKPTIIKFEQEHKKDDIISFGSSKFDQERSQLDLARMIILHGYPLSLVEQVGFKVFVKNLQPLFEFMPNSAVEISCIDIYRREKEKMYDMINKLQGRINLSIEMWSSAENSSYLCLSAHYIDEEWTLQKKILNFVTLDSLHTEDLLPEVIIKCLNEWDIDGKLFALTLDDCSIDDDITLRIKERVSEKRPFLSTRQLLDIRSAAHLINSIAQDAMDALQEVIQKIRESIRYVRSSQLVQAKFNEIAQHATVNTQKVLFLDFPVQWKSTYLMLETAVEYRSVFSLFQDHDPSYSSTLTDEEWEWATSVTGYLKLLVEITNVFAANKFPTANIYFPEICDVHIQLIDWCRSSDSFLSPMALKMKAKFDKYWSKCSLALALAAVLDPRFKMKLVEYYYSLIYGSTALERIKEVSDGIKELFNAYSICSTMIDQGSALPGSSLPSTSCSSRDRLKGFDRFLHETSQNQSMTSDLDKYLEEPIFPRNSDFNILNWWKVHMPRYPILSMMARDVLGTPMSTLAPELAFGTGGRVLDSSRSSLNPDTREALICTQDWLRNESGGMYLSSTLFQP 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00434 667 PANTHER BED FINGER-RELATED 176 655 IPR045259 -
Vimu5g00434 667 Coils Coil 308 328 - -
Vimu5g00434 667 Pfam Domain of unknown function (DUF4413) 424 521 IPR025525 GO:0003677
Vimu5g00434 667 Pfam BED zinc finger 17 60 IPR003656 GO:0003677
Vimu5g00434 667 SMART bed5 14 64 - -
Vimu5g00434 667 SUPERFAMILY beta-beta-alpha zinc fingers 17 64 IPR036236 -
Vimu5g00434 667 ProSiteProfiles Zinc finger BED-type profile. 14 69 IPR003656 GO:0003677
Vimu5g00434 667 Coils Coil 177 197 - -
Vimu5g00434 667 Pfam hAT family C-terminal dimerisation region 569 651 IPR008906 GO:0046983
Vimu5g00434 667 SUPERFAMILY Ribonuclease H-like 189 653 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00434 Vimu-Chr5 4201247 4203250 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00434 5 4201247 4203250 Vimu5g00434 5 4201247 4203250 ECH