Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00391 ATGGTGTTGTCGGCTTCGCCATGTTCCTTGGCGAGAAGCTCGCTGGAGGAGATGCTGGATTCACTTCGGCGGAGGGACGAGGAGGAGGAGAGGAAGAAGGACGCGCCACCGGCCTTGCCTCCGAGGCCAACCTCGCGTGCAAGGCTTCCTTCGGCACGGCGGTCGCTGCCAAACGATTTTAAGGTCAGCGGCAGCGAGCGCCGTGTCGTGCTGGAGAACGGAGTTGCTACTAATGAGGAGAGTGAAGTGAAGGAGATGGATTTGGGGCAGAAGAGGAGAAAGTGTGGTTTTGGAAGCAAGAGGTTGAAGAAGGACGTGGAGTCTCCTTATGTGGCAATTTCTTCCAGTGATTCATCTGGGAAGGTTTGGGAATTGGATGGTGATGATAGCATATCTTATTTCATCAGAAAGAAGCTTCGTGTTTGGTGTAGGCAACCAAGAGGGCAGTGGGAACTAGGAATGGTCCAGTCAACTTCAGGAGAGGAAGCATTCGTTTCACTCTCAAATGGAAATGTTATGAAAGTGGACAGGTCAGAGATTCTACCAGCAAATCCTGATGTTTTGGAGAATGTGGATGATCTAATTAAACTTTGTTATTTGAACGAACCGTCGGTTCTTCACAATCTTAAATTAAGATATTCTCAGGGGATGATTTATAGTAAAGCAGGGCCAATTTTAATTGCACTCAATCCTTTCAAAGATCTTCAGATGTATGGAAATAAATATGTCTCAGCCTGTAGCCAGAGAACTATGAATGGTCCTCATGTTTATGCTACAGTAGATGCAGCTTATAACAAGATGATGAGAGATGAAGTAAATCAGTCCATTATCATAAGTGGTGAGAGTGGATCTGGGAAGACAGAAACAGCTAAAATCGCAATGCAATACTTAGCTGCTCTTGGCAGTGGTGGTAATTGTGCCATAGAAAATGAATTTCTTCAGATAAATCGTATTCTGGAGGCTTTTGGGAATGCGAAAACATCTAGGAATAACAACTCTAGCAGATTTGGAAAGTTGATTGAAATTCACTTTGGCTCCACGGGTAAAATATTTGGGGCTAAAATTCAAACCTTATTGTTGGAAAAGTCCAGAGTTGTTCAACTGGCCCGTGATGAGAGATCATATCACATATTTTATCAACTTTGTGCTGGATCTTCATCTGATCTTAAAGAGAAACTAAATCTTAGAGCAGTAAGTGAATATAAGTATCTAGTTCAGAGTGATTGCATGTCAATTGATGGTGTTGATGATGCCAAAAACTTTGATCAGCTGATGGAAGCACTGGATGCAGTTCGAGTGTGTAAAGAGGATCAAGAGCTGATCTTTAAGATACTTGCTGCAATACTATGGTTGGGAAATATATCATTCCAAGTAGACAGGGAAAATCACATTGAGGTTGTTGAGGATGAAGCTGTAAACAGTGCTGCCCAGCTCATGGGTTGCAGTTCCCAGGATTTAATGACAGCATTATGTACCCATAAAATCCAAGCTGATGAAGATACTATTGCAAAAAATTTGACATTGAAGCAGGCAATGGAAAGAAGAGATGCAATTGTAAAATTTATCTATGCAAGCTTGTTTAACTGGCTCATAGATCAACTTAACAAGTCACTTGAAGTGGGTAAAAAATGTACATGGAAATCCATAAGTATCCTCGATCTTTATGGGTTTCAGACTTTCCAGAAAAATGGCTTTGAGCAATTTTACATAAATTATGCGAATGAAAGGATTCAACAACACTATAATCGCCATCTGTTTAAACTAGAGCAGGAGGACTATGAATTGGATGGCATTGATTGGACTAAAGTAGATTTTGAGGACAATCAAGGGTGCTTGGATCTATTTGAGAAGAAACCTCAAGGTCTACTCTCTTTATTGGATGAGGAGTCAAATTTACCAAACGCTTCTGATCTGACATTTGCCAACAAACTTAAGCATCACTTGCACCCTAATCCTTGCTTCAAAGGGGAAAGAGGCAGAGCTTTCCGCATTCGTCACTATGCAGGAGAGGTGCTGTATGATACAAATGACTTTTTAGAAAAGAACAGAGACACGATGGCTTCTGACTGCATTCAATTCCTGTCATCATGTAATTGTGAACTGCTGCAGTTGTTCTCCAAAATGTTTAACCAGTCTCAAAAGCAGAGTGTTGCAACAAAGTTCAAGGTTCAATTGTTCAAGTTGATGCATCAGTTGGAGAGCACCATGCCTCACTTTATTCGCTGCATAGCACCAAACACTAAGCAGCTTCCTGACATTTATGATGAAGGACATGTCCTACATCAGCTCAGGTGTTATGGAGTTCCAGAAATCGTTAGACTTTCAAGGGCTGGATATCCTACTCGAATGACCCATCAAGAATTTTCCAGAAGGTATGTGTTTATGCTTTCTGAAGCCAACTTATCCCATGATCCATTGAACATCTCAGTTGCTGTTTTGCAAAAATTTAATATCCCTTCTGAAATGTACCATGTTGGCTACACCAAATTGTATCTTCGAGCAGGGCAGATTGATGCACTGGAGAATATAAGAAAGCAGATTTTGCAGGGAATAATTGGGATTCAAAAATGTTTCCGTGGTCATCAAGCTCGTGGTTGTTTCTGTGAACTTAAGAATGGAGTGACAACACTACAATCATTTATTCGTGGAGAAAATTCAAGAAGGAAATATGGTGCCATGTCGAAGTCTTCAATAACAATTTATTCTAGAAAACTGGAGGAGATCCAAGCAATCACACTATTACAATCTGTAATTCGTGGTTGGCGGGTTAGAAAGGATGCTAGTCATGTAAATAGGTTAAAGAAATATCCTGAAAATGCTAAACCTAGGCGGAAGTCCTTTATGAAGATAATACCAGAAGTACAGTTGATTGTTTTCAATCTTGAGGATATAGTTATTTGGACAATGGGAAAGGGGATGCTTGTTGACACTAGGATACTGATAGGATATAAGAAGCAGAATGGGGCCATATATATGGAATGCATGTCCAACGTGATGCACGCTAGCATTGGCTTTGAGGATTTGTCCAAAGAGCCTGTTCAGAATCTGCTTTCAGCTTTAGCAGAACTCCAAAGGCAGGTTGATAAGGCTGATGCAGTTGTAGAGCAAAAGGAAGAGGAATATATTGAGTTGAGGGAACAGCTAAAACAATCTGAGAGAAAGAGGATTGAATATGAGACAAAAATGAAATCAATGGAAGAGGCTTGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGTTGCTGCTAGAAAGAGCCTTGCTTCTGAGAATGCTACTGTTCAACCTGTAAGACATGATTTTGTGTTACCTCGTGGTTATGATTCTGAAGACACGTCCATGGGATCAAGAACTCCTGGTGGGAGCACACCAATGCTTTCTGGCAATCTGTCTATCACTGATGCAGGGAGACAGGTCAATGGCAATTTGACTACAATCAGCAATCTGATGAAGGAATTCGAGCAACGAACACAGGACTTTGATGATGAAGTAAAAACTTTGCATGATGTCAAACCGGGGCAGTGTGCAAACACAAACTCGGTTGAAGAGCTTAGGAAACTTAAACAGAGATTTGAAGGGTGGAAGAAACAATACAAGATCAGATTACGTGAGACCAAGGCAAGGCTGTATAAATCAGAATCAGAGAAAAGTTGGCGAGCATGGTGGAAGTTAGGCTCCAGAGCATAA 3687 0.412 MVLSASPCSLARSSLEEMLDSLRRRDEEEERKKDAPPALPPRPTSRARLPSARRSLPNDFKVSGSERRVVLENGVATNEESEVKEMDLGQKRRKCGFGSKRLKKDVESPYVAISSSDSSGKVWELDGDDSISYFIRKKLRVWCRQPRGQWELGMVQSTSGEEAFVSLSNGNVMKVDRSEILPANPDVLENVDDLIKLCYLNEPSVLHNLKLRYSQGMIYSKAGPILIALNPFKDLQMYGNKYVSACSQRTMNGPHVYATVDAAYNKMMRDEVNQSIIISGESGSGKTETAKIAMQYLAALGSGGNCAIENEFLQINRILEAFGNAKTSRNNNSSRFGKLIEIHFGSTGKIFGAKIQTLLLEKSRVVQLARDERSYHIFYQLCAGSSSDLKEKLNLRAVSEYKYLVQSDCMSIDGVDDAKNFDQLMEALDAVRVCKEDQELIFKILAAILWLGNISFQVDRENHIEVVEDEAVNSAAQLMGCSSQDLMTALCTHKIQADEDTIAKNLTLKQAMERRDAIVKFIYASLFNWLIDQLNKSLEVGKKCTWKSISILDLYGFQTFQKNGFEQFYINYANERIQQHYNRHLFKLEQEDYELDGIDWTKVDFEDNQGCLDLFEKKPQGLLSLLDEESNLPNASDLTFANKLKHHLHPNPCFKGERGRAFRIRHYAGEVLYDTNDFLEKNRDTMASDCIQFLSSCNCELLQLFSKMFNQSQKQSVATKFKVQLFKLMHQLESTMPHFIRCIAPNTKQLPDIYDEGHVLHQLRCYGVPEIVRLSRAGYPTRMTHQEFSRRYVFMLSEANLSHDPLNISVAVLQKFNIPSEMYHVGYTKLYLRAGQIDALENIRKQILQGIIGIQKCFRGHQARGCFCELKNGVTTLQSFIRGENSRRKYGAMSKSSITIYSRKLEEIQAITLLQSVIRGWRVRKDASHVNRLKKYPENAKPRRKSFMKIIPEVQLIVFNLEDIVIWTMGKGMLVDTRILIGYKKQNGAIYMECMSNVMHASIGFEDLSKEPVQNLLSALAELQRQVDKADAVVEQKEEEYIELREQLKQSERKRIEYETKMKSMEEAWQKQMASLQMSLVAARKSLASENATVQPVRHDFVLPRGYDSEDTSMGSRTPGGSTPMLSGNLSITDAGRQVNGNLTTISNLMKEFEQRTQDFDDEVKTLHDVKPGQCANTNSVEELRKLKQRFEGWKKQYKIRLRETKARLYKSESEKSWRAWWKLGSRA 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00391 1228 MobiDBLite consensus disorder prediction 20 58 - -
Vimu5g00391 1228 ProSiteProfiles IQ motif profile. 907 935 IPR000048 GO:0005515
Vimu5g00391 1228 Gene3D - 850 898 - -
Vimu5g00391 1228 Gene3D - 779 846 - -
Vimu5g00391 1228 Pfam IQ calmodulin-binding motif 909 926 IPR000048 GO:0005515
Vimu5g00391 1228 Pfam IQ calmodulin-binding motif 851 864 IPR000048 GO:0005515
Vimu5g00391 1228 MobiDBLite consensus disorder prediction 20 37 - -
Vimu5g00391 1228 CDD MYSc_Myo8 203 833 IPR036022 -
Vimu5g00391 1228 PRINTS Myosin heavy chain signature 219 238 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu5g00391 1228 PRINTS Myosin heavy chain signature 548 576 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu5g00391 1228 PRINTS Myosin heavy chain signature 601 629 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu5g00391 1228 PRINTS Myosin heavy chain signature 317 344 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu5g00391 1228 PRINTS Myosin heavy chain signature 273 298 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu5g00391 1228 Gene3D Kinesin motor domain 188 778 IPR036961 -
Vimu5g00391 1228 SMART MYSc_2a 183 846 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu5g00391 1228 Gene3D - 560 735 - -
Vimu5g00391 1228 ProSiteProfiles IQ motif profile. 870 899 IPR000048 GO:0005515
Vimu5g00391 1228 Coils Coil 12 32 - -
Vimu5g00391 1228 Gene3D Myosin VI head, motor domain, U50 subdomain 430 537 - -
Vimu5g00391 1228 Coils Coil 1013 1068 - -
Vimu5g00391 1228 Gene3D - 373 429 - -
Vimu5g00391 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 893 IPR027417 -
Vimu5g00391 1228 SMART iq_5 906 928 IPR000048 GO:0005515
Vimu5g00391 1228 SMART iq_5 846 868 IPR000048 GO:0005515
Vimu5g00391 1228 SMART iq_5 869 891 IPR000048 GO:0005515
Vimu5g00391 1228 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 136 185 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vimu5g00391 1228 MobiDBLite consensus disorder prediction 1104 1124 - -
Vimu5g00391 1228 Pfam Myosin head (motor domain) 191 833 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu5g00391 1228 ProSiteProfiles Myosin motor domain profile. 189 845 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu5g00391 1228 PANTHER MYOSIN 182 1217 - -
Vimu5g00391 1228 FunFam Myosin heavy chain 373 429 - -
Vimu5g00391 1228 ProSiteProfiles IQ motif profile. 849 876 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00391 Vimu-Chr5 3652928 3667560 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00391 1 1222 Myosins gene family AT5G54280 54.039 0.0 1307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00391 5 3652928 3667560 Vimu5g00391 5 3652928 3667560 ECH