Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00363 ATGGATACTATAGCGAGCGTGGCATCAAGCGTGGCTGCACCCCTGCTGCGAAACATCACCTACGTGTTGATGTACAGCACTTACCTGACAGAGCTGGAAACGGAGATCAAGAGGCTGCAGAGTGAGGAGAAGGAAGTGAGGCACACGGTTGAAGCCGCCAAAAGGGGCGGTGAAGAGATCGAGGACACCGTTCGTGACTGGTTCGAGAGAGTGCGTGCAGCTGTGGAGCAGGGGCAGGCATTCCTAGAGGAGGAAGAGAGGGAGAGGGTAGGATGCATGGACGTGTACTCGAAGTACACCAACAGCCAGAGAGCGAGAACCTTGGTGGAGATTGTGAGGGAGGTAAGGAAAGAGACGTTTGATCGTGTTTCCTATAGGTGTGCCTTAAGATGCAACGTTGGTCCGGCTGCAAGAGAGTATGTTGCTATTCAATCGAGAACTGTGATGTTGAATGATGTTGTGAAGATGCTGAAGGATGGTGGGGTGGACATTGTTGGAGTGTATGGAGTGGCTGGCGTGGGGAAAACTGCAATGGTGAAGGAATTGGCGTGGCAGGTTGAGAAGGATGGCTTGTTTGATGTGGTGGTGGTGGTCACCGTGACGAATTCGCTTGATGTGGGAAGGATCCGCAATGAGATTGCTGATGGGTTGGGGTTGAAGTTTGATGAGCTGACGGAGCTGGGGCGAGCGAGCCGGTTGCGCCAGAGGATTCGGCAGGAGCAGAGAATTCTTGTGGTGTTGGATGATCTGTGGGGGAAGCTTGATTTGACAAAGATTGGTGTGCCTTTTGGTGAGGACTACAAAGGTTGCAGATGCCAGTTGTTGGTCACATCCAGGAATCGTAATGTGTTGAGTTCTAATTTTGGGTCAGGGAAATTTTGTAGGCTTGAGGTTTTGTCTGAGGATGAAAGTTGGGAGTTGTTTGAGAAGAGAGCCGGGGATGCAGTTAATGACCCTAGCATTCAATCAGTGGCCAAAAAAGTAGCGAAGAGCTGTGGTGGATTGCCTCTTCTGATAGTCACAGTGGTGGAGGAATTGAAGAACAAGGATTTATATGCTTGGAAGGATGCGCTGGAACAGATAACAAGTTTTGAACTTGAAGGGTGTCTTTATTCTCCTTTGCGTTCTGCTATTGAGCTGAGTTACGACCATTTGGAAAGTCAGGAACTAAAAACTTTCTTCCTGCTTTTGGGTTCCATTGGAAATGGTTGTAGCACAAGAGATTTGTTGGTGTTTGGTTGGTGCCTGGGACTGCACAAACAAGTTGACTCATTGGCGGATGGGAGAAACAGACTTCACAAATTGATAGACAACCTTAGAGCTGCTTGTTTGTTACTTGATGAGGGGAAAAGAGATTCTGTCGTGGCGCTTGAGGTGGTTCGACATGTGGCTAACTCTATTGCGACCAGGGTCAAACCTTTCTTTACTGTGCAGAGAAACAAGGAATTTAAATGGCCTAGAATGGATTTCTTAGGAAGTTGTCATCATATTTTCTTAGATTGGTGTTATATCCGCGATCTTCCTGAGGTGTTAGAATGTCCCAAGTTGAAGATACTCCAAATAAATAGTCAAGGTAACTGTTTGAAAATCCCTGATGATTTCTTTGTTCATATGAAAGAGTTGAAGGTGCTGAGTTTAGGAGGACTAGATTGTACTCCATCGCTCCCTCCGTCTCTCAGCCTCTTGACAGACCTCCAAGCATTGTATCTGTGTGAGTGCAAGTTGGAAGACATAGCTACTGTCGGGGAAATCACAAGTTTAGAGATTCTCAACTTGGAAAAATCTGAGCTTAAAGAGCTCCCTGCAAAAATAGGCGGATTAAGTAATCTTCGGTTGCTAGATTTGACCGATTGCCCAACACTAGGAGGAATTCCTGGCAACGTGATTTCGAGGTTGACAAGATTGGAAGAGCTTTACATGGGAAACTGTGATGTTCAAGTGGAGGCTAAGGAAAGAAAAAGCCAAAACAATGATTCGAGTTTAAGTGAGTTAAAGCATTTGAATCAAGTAAAAATTTTGAATGTCCAGATAGAAGATACTTCAGTTTTTCCAAGAGACATGCTTAGCTTTGGGAGACTAGAAAGCTACAAGATTTTGATTGGGGATGGTTGGAAATGGTCTGGGGTTGAGTCTGAGAATTACAAAACTTCAAGACTTCTGAAGTTAAATTCGGGTGCAGACCCAACCATTCTAAAGGACTATGGGATAAAGATGTTGATGAATAAGGCTGAAGAGTTGTATTTAGCTGAACTCAAAGGTGTTCGAGAAGTACTCTACGAATTGAATGATGAAGGGTTTTCGCAATTGAAGCATCTCTGCATCCTAAACTGTGCTGAAATGGAGAGCATTATTGGATCAACGGAGTGGGCTTATAGTGATCATGCCTTCCCAAACTTGGAATCATTGATCCTTCACAATCTGATTAACATGGAGAGGATATGCAGTGACCCCCTTCCAGCACAGGCCTTTAGGAAACTACAAGTTATCAAAGTAAAGGATTGTGATAGGATGGAGTTTGTTTTCTCGCATTCCATGGTTAAACACCTTTCTGAACTTGTTGAGATTGAGATTTCTGAATGCAAATCTATGACCAATATCTTATCTGGGCAAAGACAAGAGGATGCTGATGCTGGACAAACCAACAAGATCACGCTCATCAACTTGCGTTCACTTACTCTACAATGCTTACCTTCCCTTGTTGAATTTCCGAACCTGGAGACCCTGAAGCTGTATTCAATCAATATCCAGATGATATGGATTAATCACCATCATTCTTACTTTGAAAACTTGACCTCTTTGACAGTAGATGGATGTGAACGGTTGACATATATTTTCTCATACCCTGTGGCTGTAAAACTTGTCAAGCTTCAACATCTTTTACTTAGTTCATGCAAATTCGTAGAAAAGATATTTGTGCTGGATGAAAACTTGGGTCACGTTCATCATTTTAGAAAATCCATTCACACAGAACTGGTTCCAATTTTCCCCAACCTGGAGACATTTGTGATTTCTCAGATGGATAATTTGAAGGCAATATGGCCAGCCCTACTCCCTCAAAATTCGTTTTGTAAACTGAAAAAGATGGAAATCGAATCCTGCAACAATCTCTTGAATGTGTTCCCATGTCATGTGCTAGACAAATTACAAAGCCTGGAATCACTGAATGTATGGAAGTGTATGGCATTGGAAGTTGTATATGAAATTGATGGTATAAACACAGAGCAAGAAGGGCTAGACATTCCACTGAGAACATTATCTTTGGGTAATTTACCAAAGCTAAAGCATTTGTGGAATAAGGATCCTGAAGGAAATATCAAATTTCAAAACCTGTTTATGGTACAAGCTTCTAAATGTGAAAGTCTAAAATATGTGTTTCCACTGTCTCTGGCCAAAGACCTTCTGCATCTCCAATTCCTTGAGATAAGTGATTGTGGTGTAGAGGAAATTATTGCAAGTGATAAGGAAGGGGTAGGGGTAGCTTTTGGGTTTGTTTTCCCAAAATTAGTATCCATAAAACTTTTTAATTTGCCAGACCTTCTATGCTTTTGTAATGGAAATCACAACCTCAGATTTCCATTGTTGAATCAATTTTTTGCTGTTGAATGCCCAAGAATGGAGACTTTCTCTCAGGGAATTTTAAGGGCATCGATCCTTAGAAAAATACATTTGACTCGGAAAGGAGATGAGTGGTACTGGCAAGGTGACCTTAATACAACTATAAGAAAGCTTTTCAATAGAGGTACGCAAGTTTTAGTTGTCTGA 3762 0.4269 MDTIASVASSVAAPLLRNITYVLMYSTYLTELETEIKRLQSEEKEVRHTVEAAKRGGEEIEDTVRDWFERVRAAVEQGQAFLEEEERERVGCMDVYSKYTNSQRARTLVEIVREVRKETFDRVSYRCALRCNVGPAAREYVAIQSRTVMLNDVVKMLKDGGVDIVGVYGVAGVGKTAMVKELAWQVEKDGLFDVVVVVTVTNSLDVGRIRNEIADGLGLKFDELTELGRASRLRQRIRQEQRILVVLDDLWGKLDLTKIGVPFGEDYKGCRCQLLVTSRNRNVLSSNFGSGKFCRLEVLSEDESWELFEKRAGDAVNDPSIQSVAKKVAKSCGGLPLLIVTVVEELKNKDLYAWKDALEQITSFELEGCLYSPLRSAIELSYDHLESQELKTFFLLLGSIGNGCSTRDLLVFGWCLGLHKQVDSLADGRNRLHKLIDNLRAACLLLDEGKRDSVVALEVVRHVANSIATRVKPFFTVQRNKEFKWPRMDFLGSCHHIFLDWCYIRDLPEVLECPKLKILQINSQGNCLKIPDDFFVHMKELKVLSLGGLDCTPSLPPSLSLLTDLQALYLCECKLEDIATVGEITSLEILNLEKSELKELPAKIGGLSNLRLLDLTDCPTLGGIPGNVISRLTRLEELYMGNCDVQVEAKERKSQNNDSSLSELKHLNQVKILNVQIEDTSVFPRDMLSFGRLESYKILIGDGWKWSGVESENYKTSRLLKLNSGADPTILKDYGIKMLMNKAEELYLAELKGVREVLYELNDEGFSQLKHLCILNCAEMESIIGSTEWAYSDHAFPNLESLILHNLINMERICSDPLPAQAFRKLQVIKVKDCDRMEFVFSHSMVKHLSELVEIEISECKSMTNILSGQRQEDADAGQTNKITLINLRSLTLQCLPSLVEFPNLETLKLYSINIQMIWINHHHSYFENLTSLTVDGCERLTYIFSYPVAVKLVKLQHLLLSSCKFVEKIFVLDENLGHVHHFRKSIHTELVPIFPNLETFVISQMDNLKAIWPALLPQNSFCKLKKMEIESCNNLLNVFPCHVLDKLQSLESLNVWKCMALEVVYEIDGINTEQEGLDIPLRTLSLGNLPKLKHLWNKDPEGNIKFQNLFMVQASKCESLKYVFPLSLAKDLLHLQFLEISDCGVEEIIASDKEGVGVAFGFVFPKLVSIKLFNLPDLLCFCNGNHNLRFPLLNQFFAVECPRMETFSQGILRASILRKIHLTRKGDEWYWQGDLNTTIRKLFNRGTQVLVV 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00363 1253 SUPERFAMILY L domain-like 762 1064 - -
Vimu5g00363 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 396 IPR027417 -
Vimu5g00363 1253 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1082 1216 - -
Vimu5g00363 1253 Coils Coil 29 49 - -
Vimu5g00363 1253 PRINTS Disease resistance protein signature 237 251 - -
Vimu5g00363 1253 PRINTS Disease resistance protein signature 164 179 - -
Vimu5g00363 1253 PRINTS Disease resistance protein signature 332 346 - -
Vimu5g00363 1253 PRINTS Disease resistance protein signature 605 621 - -
Vimu5g00363 1253 Gene3D - 298 386 IPR042197 -
Vimu5g00363 1253 Gene3D - 123 289 IPR027417 -
Vimu5g00363 1253 Gene3D Ribonuclease Inhibitor 649 982 IPR032675 -
Vimu5g00363 1253 Gene3D Ribonuclease Inhibitor 983 1196 IPR032675 -
Vimu5g00363 1253 Gene3D Ribonuclease Inhibitor 464 648 IPR032675 -
Vimu5g00363 1253 SMART AAA_5 161 302 IPR003593 GO:0016887
Vimu5g00363 1253 Pfam NB-ARC domain 149 383 IPR002182 GO:0043531
Vimu5g00363 1253 SUPERFAMILY L domain-like 491 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00363 Vimu-Chr5 3270693 3275022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00363 515 630 Receptor kinase-like Gene Family AT3G56370 35.294 3.36e-08 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00363 5 3270693 3275022 Vimu5g00363 5 3270693 3275022 ECH