Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00332 TTGAGTGATGAAACCTTCAAATTGCAGGCTCGGATAAAGAAGATAATGCAAGCTGATGAGGATGTTGGAAAGATAGCACTGGCTGTTCCTGTTTTAGTTTGTAAGTTGCTGCGGTTTACTGTGTTGTTAACTTCAGACCGCTTCTTGCTTGTTTCTCTTATATATGTTGTTGACACTGCTCTTGAATGGATTTCAGCTAAAGCTCTAGAACTATTTTTGCAAGATCTTTGTGACCGTACTTATGAAATAACTCTTCAAAGAGGAGCAAAGACCATGAATTCGTTGCATTTGAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGGGACGTTGTTAGCAGAGTTCCGGATTACGGTCATGGTCATGGCCATGCTGAGGCTGGTGCTGATGATCGGGCCATTTCAAAAAGAAGGAAAGCTGTTGGTGATGATTGTAATGACAGTGATGAAGAGGCTAAGAGAAGCAAGATGCAAGAGTTGAGCCACACTGGCAGTACTGGTAGAGGAAGGGGCCGGGGTAGAGGAAGAGGCCGTGGCAGAGGACGACCACCTTTAGTAAGAGACACATATCATCAGGATGCTGAATCTGAGCCATGCCCTTCTGTTCAGCCGAGCAACCAACAAAGTGCAAACCCAAGTGTTGCAGTGGACAGTGGTTCTGAGTCAAAAGATATACCAAAGGAGGAGAATGTTGCAGCTCCTGTTGTAAGCGCTGATTCACTCCGAAACATTGACCTGAATGCCATTACGAATGAAAATGATGACAAAAAAGCTAGCGTGGCAGAACCTCCTTCAACAGAGGGCAAGCATGAAGAGATTCTGGGGTGGCCCCTTTCTGATGTGGACAAGATGGCCATTGATTCGACACAGCTTGCGCAGCTGGGTAGGCCATTAGAAGAGGAGGAGGAAGATTATGACGAGGAGGAGGGGTAA 939 0.4537 MSDETFKLQARIKKIMQADEDVGKIALAVPVLVCKLLRFTVLLTSDRFLLVSLIYVVDTALEWISAKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYGHGHGHAEAGADDRAISKRRKAVGDDCNDSDEEAKRSKMQELSHTGSTGRGRGRGRGRGRGRGRPPLVRDTYHQDAESEPCPSVQPSNQQSANPSVAVDSGSESKDIPKEENVAAPVVSADSLRNIDLNAITNENDDKKASVAEPPSTEGKHEEILGWPLSDVDKMAIDSTQLAQLGRPLEEEEEDYDEEEG 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00332 312 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 10 158 - -
Vimu5g00332 312 MobiDBLite consensus disorder prediction 251 275 - -
Vimu5g00332 312 Gene3D Histone, subunit A 4 116 IPR009072 GO:0046982
Vimu5g00332 312 MobiDBLite consensus disorder prediction 121 160 - -
Vimu5g00332 312 MobiDBLite consensus disorder prediction 292 312 - -
Vimu5g00332 312 SUPERFAMILY Histone-fold 62 117 IPR009072 GO:0046982
Vimu5g00332 312 MobiDBLite consensus disorder prediction 198 220 - -
Vimu5g00332 312 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 37 IPR003958 -
Vimu5g00332 312 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 66 101 IPR003958 -
Vimu5g00332 312 MobiDBLite consensus disorder prediction 121 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00332 Vimu-Chr5 3058349 3061380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00332 10 298 CCAAT-HAP5 Transcription Factor Family AT3G12480 42.020 7.90e-61 194
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00332 5 3058349 3061380 Vimu5g00332 5 3058349 3061380 ECH