Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00330 ATGGCCGCCACGCCTCCTTCTTTTTCCCCCTCTCGCACCACCTGCGCCTCTCTCCTACGCGAATTGCAGATGATATGGGATGAGATTGGGGAGAGTGACAATGATAGAGACAGCATGCTTCTTCAACTGGAACAAGAATGTCTGGACATCTATCACCGGAGAGTTGAGGAGACGAGGACGCACAAGGCTGAAATGTATCAGTGGTTGGCAGATGCTGAAGCTCAAGCAGCTAATCTTGTTTCTTCCCTTGGGGAATCTACGGTGCTCCCACGGGGAAAGGGATCCTTGAAGCAGCAAATAGCTACTATTAGACCTGTCTTAGAGGATTTGAGGTCAAAGAAGGATGAAAGAATCAAGGAATTTTTAAAGATAAAGTCCCAAATTTCTCAGATATGTGATGAAATAGCAGGTTGTGGACAGTACAAAAGTGTCACAGACTCAGATGTTAATCAAAGTGATCTGACATCAAAGAAATTGGGGGAACTAAAGTCGCATCTACAGGAGCTTCAGAATGAAAAGATATTACGTCAGCAGAAAGTGAAGAGTCATATCAGTACTATTTGCGACCTTACAGAAGTAATGTCAATTGATTTTATGAAGACATTAAATGAAATTCACCCAAGTCTGGATGATTCAGTAAAAGGTACACTACAGAGCATCAGCAATGACACGCTTGCAAGATTAACCGGGGTTATTCATTCATTAAAGAGGGAGAAGAAACAAAGGCTACAAAAGATGCAAGAGCTTGCTAAATTGCTGGTAGAGCTTTGGGATCTCATGGAGACACCAACTGAAGAGCAAAAGGAGTTTAGCCATGTTACTCGATTACTTTCAGCATCAACCGATGAAGTGTCAACATGTGGTTGTCTTTCTTCAGAAGTCATTGAGCAGGTTGAAGGTGAAGTCCATCGGTTAAATGTTGTCAAAGCCAGTAAGATGAAGGATTTGGTGTTTAAGAGGCAGAATGAGCTTGAAGAAATTTACAGAGGAGTTCACATGGATGTTGACAGTGAATCTGCAAGACAGATTTTGACTAGCCTCATTGAATCTGGTAATGTTGATCTGTCTGATTTGCTTCAAAACATGGATGGTCAAATAAGACAAGCCAAGGAGCAAGCTCTAAGCAGAAGAGATATCTTAGATAGGACAGAGAAATGGAAATTTGCAGCTGAGGAGGAAAAGTGGTTAGATGAATACGAAAGGGATGAAAATCGATATAGTGCGGTGAGAGGAGCGCACAAAAATTTGAAACGCGCTGAGAAAGCTCGGATTCTCGTCAGCAAGATACCATCTATTGTTGAGAATTTGACTGCAAGAGTGAAAGCGTGGGAAATGGAAAAAGGAATACCTTTCTTGTATGAAAAGATACCATTGTTACATAGCTTGGATGAATATACTGTCCAACGACGACTCAGAGAAGAAGAGAAGCGCAAATATCGGGAGCAGAAACGGCTACATGAACAAGCAGCTGTAGAGCAAGAGTCACTTTTTGGTTCAAGGTCTGCAACAAAGAAGCCTCTGTGTCAGAGCAACAATGGCAACACCATAGCAGGGACACCAACCGGCCGTAGACTGCTTACTTCATCCGGACGCCATGGAACCTCTGGAGGAAAGGAACGCAGAGAAAGTGGCAGATTGAACCCCATAATTCCAGTGAACTATGTTGCTCTTCCAAAAGATGATTCTGTTTCTAGGGGAAATTGA 1704 0.4278 MAATPPSFSPSRTTCASLLRELQMIWDEIGESDNDRDSMLLQLEQECLDIYHRRVEETRTHKAEMYQWLADAEAQAANLVSSLGESTVLPRGKGSLKQQIATIRPVLEDLRSKKDERIKEFLKIKSQISQICDEIAGCGQYKSVTDSDVNQSDLTSKKLGELKSHLQELQNEKILRQQKVKSHISTICDLTEVMSIDFMKTLNEIHPSLDDSVKGTLQSISNDTLARLTGVIHSLKREKKQRLQKMQELAKLLVELWDLMETPTEEQKEFSHVTRLLSASTDEVSTCGCLSSEVIEQVEGEVHRLNVVKASKMKDLVFKRQNELEEIYRGVHMDVDSESARQILTSLIESGNVDLSDLLQNMDGQIRQAKEQALSRRDILDRTEKWKFAAEEEKWLDEYERDENRYSAVRGAHKNLKRAEKARILVSKIPSIVENLTARVKAWEMEKGIPFLYEKIPLLHSLDEYTVQRRLREEEKRKYREQKRLHEQAAVEQESLFGSRSATKKPLCQSNNGNTIAGTPTGRRLLTSSGRHGTSGGKERRESGRLNPIIPVNYVALPKDDSVSRGN 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00330 567 Coils Coil 232 256 - -
Vimu5g00330 567 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 11 562 IPR007145 GO:0000226|GO:0008017
Vimu5g00330 567 Coils Coil 152 172 - -
Vimu5g00330 567 Coils Coil 352 372 - -
Vimu5g00330 567 MobiDBLite consensus disorder prediction 492 547 - -
Vimu5g00330 567 MobiDBLite consensus disorder prediction 494 533 - -
Vimu5g00330 567 Gene3D - 366 499 - -
Vimu5g00330 567 Coils Coil 462 492 - -
Vimu5g00330 567 Pfam Microtubule associated protein (MAP65/ASE1 family) 17 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00330 Vimu-Chr5 3039203 3048319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00330 13 533 EF-hand Containing Proteins AT5G62250 37.248 1.34e-95 300
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00330 5 3039203 3048319 Vimu5g00330 5 3039203 3048319 ECH