Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00325 ATGGTGACTTTTGTTCTGGGGACAGCAGAAGAGGCCACACCAAATCCTGTGAATAACAAAGCTGTTGATGCAGAAAATGAAGTTAGTGGTGATACTGAAATAAAGGGCACAGAAGTGCCTAAAGAAACCTCTGCCAAAGAAAGAGAATATTGCCTTCCTAGTGAAGCAACTGAGATACTGAAATCATTGGCTGCTAAATGGGAGAATGTAATCGATGTCAATGCATTGCAAGTAATCCCTCTTAAAGGGGCAATGACAAATGAGGTTTTCCAGATAAAATGGAAGACAACAGAAGGAGAATCCTCAAGAAAGGTTCTGGCAAGAATCTATGGTGATGGTACTGCTATTTTCATTGATAGGGATGTTGAGGTCAAGACGTTTGAATTTATGTCAAAGAGTGGACAAGGGCCTCGTTTGCTAGGAAGGTTTGATAATGGTCGTATTGAGGAATTCATCCACGCAAGGACATTATCAGCATCTGATCTGCGAGATCCATCCACTTCTGCTCTTATAGCAGCCAAAATGAAGGAGTTTCATGATCTTGATATGCCTGTTCCAAAGACTGTGAACATTTGGGATAGGTTAAGAGATTGGCTTAAGGAAGCCAAACGCTTGAGTTCTCCTGAAGATGTTGAAGCATTCAAATTGAACAGTTTGGACAACGAAATATCTACTTTGGAAAAAGAATTAACAGGAACTAAGCAATGCATAGGATTTTGCCACAACGATTTGCAATATGGCAACATAATGCTTGATGAAGAGTCCTGTTCTGTCACCCTTATAGATTATGAATATGCAAGTTACAATCCTGTGGCATATGATATAGCAAACCACTTCAATGAGATGGCTGCCAATTATCACACAGATACCCCACATGTTCTTGACTTCACTAAATACCCTGATTTGGAGGAGCGTCGACGATTTGTGCAAGCATATTTGAGTTCCTCAGGTGAGCAACCTAGTGACACTGAAGTACAACAATTGCTTGATGAAGTTGAGAAGTATGCACTTGCAAGCCATCTATTGTGGGGCCTTTGGGGAATAATTTCGGTGCATGTAAATAAAATTGACTTTAAGTACAGAGAATATGCAGAACAGAGGTTCCAACAGTATTGGTCAATGAAAACTCCTGTTGTGAGCTCTGATGGCGCTTCCAATGGGTTGCAAGCAGCAACATCGACCACTCACCATAAATCAGGTAGGCTCATTGGTATCCCTAGGAGATTGAAGAGATTGTTTAATCTTGGCTTTTTCAGATCGAAACACTAG 1269 0.4082 MVTFVLGTAEEATPNPVNNKAVDAENEVSGDTEIKGTEVPKETSAKEREYCLPSEATEILKSLAAKWENVIDVNALQVIPLKGAMTNEVFQIKWKTTEGESSRKVLARIYGDGTAIFIDRDVEVKTFEFMSKSGQGPRLLGRFDNGRIEEFIHARTLSASDLRDPSTSALIAAKMKEFHDLDMPVPKTVNIWDRLRDWLKEAKRLSSPEDVEAFKLNSLDNEISTLEKELTGTKQCIGFCHNDLQYGNIMLDEESCSVTLIDYEYASYNPVAYDIANHFNEMAANYHTDTPHVLDFTKYPDLEERRRFVQAYLSSSGEQPSDTEVQQLLDEVEKYALASHLLWGLWGIISVHVNKIDFKYREYAEQRFQQYWSMKTPVVSSDGASNGLQAATSTTHHKSGRLIGIPRRLKRLFNLGFFRSKH 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00325 422 Pfam Choline/ethanolamine kinase 102 303 - -
Vimu5g00325 422 SUPERFAMILY Protein kinase-like (PK-like) 48 375 IPR011009 -
Vimu5g00325 422 PANTHER CHOLINE/ETHANOALAMINE KINASE 44 376 - -
Vimu5g00325 422 CDD ETNK_euk 76 372 - -
Vimu5g00325 422 Gene3D - 111 372 - -
Vimu5g00325 422 Gene3D Phosphorylase Kinase; domain 1 64 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00325 Vimu-Chr5 2985685 2989137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00325 42 381 Acyl Lipid Metabolism Gene Families AT1G74320 63.529 5.34e-169 476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00325 5 2985685 2989137 Vimu5g00325 5 2985685 2989137 ECH
Vimu4g02156 4 23858440 23863171 Vimu5g00325 5 2985685 2989137 PCT