Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00272 ATGAAGATGGGATTGGTGTTTGTTCTCTTAACTTGGTTCTTACTTGCGTTGGAAAATCCAGTGCTGTATCCACCGCAGAAGGAGCGATTTTCAAGGACCATGCGGGAAGCTTTACTTCCGTTTGAAGCAATTTTTCTGATTTTTTTATTTTCTGAGCAGTGTAGACAGGCAAAAATTTCATATACAGGAAAGCTAACTGTAGATGTTTGCTTTCAATATAATGATGGGCCTGTTATTAGAGAAACTACAAATTTTGGACAGTTTCCCATAATGTTGCAGTCAAAGTTATGCAACTTAAGAGGTGCTGATCCTAAAAAACTTGTGTCCTACAAGGAAGAAGCATCGGAAATGGGTGGCTACTTCGTCTTGAATGGCCTTGAGAGGGTTATCAGACTGTTAATTATGCCAAAAAGGAATTATCCAATGAGTATGGTGCGGAATTCATTTAGTGAAAGGCGAGAAGGATACACTGATAAAGCAGTTGTAATAAGGTGTGTAAGAGCTGATCAGTCTTCATTATCAATACGATTGTATTACCTTCGTAATGGGAGTGCAAGACTTGGTTTCTGGTTAAGAGGAAGGGAGTACTTACTTCCTGTTGGCATTGTTTTAAAGGCCCTCATTAGGACATCTGATCGCGAAATTTATGTAAAATTGACAAGTTGTTATAATGAAAAGTATGCAAAGGGAAAGGGTGCTGTTGGGACCCAGCTTGTTGGTGAAAGGGCAAAAATAATCTTAGATGAACTTCGAGATTTGTCTCTATTCACCCAAGATCAATGTCTAGAGTATATTGGAGAGCACTTCCAACCTATTATGCCTGAACTTAAGCAAGCCAGTTATCCTATTGTGGCTGAAGCTGTTTTGAAGGACTGCATATTAGTTCATCTGGATGAGAATTTTGACAAATTCAATCTTCTCATCTTCATGTTGCAGAAACTTTTCTCGCTTATAGACCAGACATCAGTTCCAGACAATCCTGATTCCTTGCAAAATCAGGAGGTTTTACTCCCTGGCCACCTGATTTCACTTTATATCAAGGAAAAATTGGAAGATTGGCTGCAAAAAGGAAGAAGGCTTCTTATGGATGAGATCGATAAAAAGAACAAGAAGTTTGATATCAGCGACAGTATGTATATATTTGATGGTTATTTCGGCTTGCTGTTTCTTGGATTTTATATTGTTCTGTTTGCTTCAGCTTTTGTTGTTCAAATTAAGAAAATTATGGATAAAAATTCGACAAAGCAAGTCAGTTCAGCAGTTGAAAACATGTTGAAAACTGGAAGATTAGTTACACAAACGGGTCTAGATCTGCAACAGAGGGCAGGATATACAGTTCAGGCTGAAAGGCTAAACTTTTTACGTTTTATATCACATTTTCGTTCTGTTCATAGAGGGGCCTCATTTGCTGGACTCCGTACAACAACTGTCCGGAAGCTACTACCCGAATCTTGGGGCTTTCTTTGCCCTGTGCACACGCCTGATGGAGAGCCTTGTGGATTGTTGAATCATTTGACTCGCACTTGTAATGATCTCGATAGAGGGATAACATCATTCTTTGATTCTCAAGGAAAAATTAAAGATTATTTTAAAATAAAAAAGTCTATCGAAGATATTTTAAAGGAGGTTGGGATGACACCATCAGTGCCAAACACACCTCTTCCTGGTCCACCTGAAGCTCTTACTGTTCTTTTAGATGGTTGTGTCGTTGGTTGTATAGCATCCAGTGAAGTGGAGAAAGTTGTGGCTTACATACGAGCATTAAAAGTTTCATCTGCTTCAGTGATTCCTGTTGACATGGAAGTGGGATATGTTCCTTTGAGCATGGGTGGAGCCTATCCTGGTCTATACCTTTTTACATCCCCTGCAAGATTTGTTCGACCAGTAAAAAATATATCAATTCTTCCCAATGGAAGTGAAAACATTGAATTCATTGGGCCATTTGAGCAGGTTTTTATGGAAATTAGATGTCTTGATGGAGGAGACGGTGGAAGAAAAAGTTCATTTCCTGCAACTCATGAAGAAATCCACCCAACAGAAATGCTTAGTGTAGTTGCAAATCTCACCCCGTGGTCAGATCATAATCAGAGTCCACGAAATATGTATCAATGCCAGATGGCAAAGCAAACAATGGCATTCTCTTCACAAACAATTCAACATCGTGCAGATCAGAAATTGTATCATCTTCAGACTCCTCAGACTCCCATTGTACGCACAAGTACTTATAGTAAGTACAACATTGATGAATTTCCGACAGGCACAAATGCTATAGTGGCAGTTCTGGCTTATACAGGATATGATATGGAGGATGCCATGATTCTAAATAAGTCTTCAGTGGAACGTGGAATGTTTCATGGACAAATATATCAGACGGAAACTATTGACTTAACTGAACAAAGCAAAAAGTCAGACCAATCTTCGAGAACGTTCAGAAAAAGTAATGTAGAGAAATCAGCTTATCCCTCTATTGATTCAGATGGACTTCCACATGTTGGTCAGATGATACAACCAGATGAACCCTATTGTAGCATTTATAATGAAGTTACAAGTTCCACACGCACCTTTAAAAGAAAGGGTTCTGAAGCTGTTTATGTTGATTATGTTGCTGTGGATGTCAAAAACACGAAGCATCTTCAGAAGGTTAACATACGCTTTCGACATCCTCGGAACCCTGTTATTGGGGATAAATTTAGCAGTAGACATGGACAGAAAGGTGTTTGCTCTCAGTTGTGGCCAGATGTTGATATGCCATTTTCTGGAAATACTGGCATGCGCCCTGATCTCATCATCAATCCCCATGCATTTCCTTCCAGGATGACAATTGCTATGCTTTTGGAATCAGTTGCCGCTAAGGTTCTGTATCTTATTTGTGCTGTATCAGTCTCACTTCTGAAGGCATGCATGATTAATGATAATTTCTTCTTGCAGGGAGGTTCCTTACGTGGAGAATTTGTAGATGCAACTCCATTTCGAAGTTCAGTGAAGAAAGACGGTGAGGGATCTGATTCAAAATCAGATTCACTTGTGGATGATCTTGGTCTTATGCTAAAAGAAAAGGGATTTAATTATCACGGTCTGGAGGTTCTATACAGCGGTGTTTATGGAACAGAACTAACATGTGAAATATTTATTGGGCCTGTTTATTATCAGCGGCTGCGTCACATGGTTTCAGACAAATTTCAGGTGAACAAATTCACTGCTCTTCCTATAAAGTCATCAACAAAAGGATACTTCTCCATATTTTCTGTGATAGCACGTCGAAAATGTCAGGTTCGATCTACTGGCACAATTGATCAGGTCACCCGGCAGCCGATAAAAGGACGAAAGCGTGGTGGAGGAATTCGATTCGGCGAAATGGAACGTGACTCTCTGCTTGCGCACGGAGCTGCATATCTTCTGCATGATAGGTTGCACACATGTTCTGATTATCACATTGCTGACGTATGTTCTCTGTGTGGAAGCATGCTTACAACAACATTCATCCAGCCTCAAAAGAGGCCGGTGCGCCAGATCGGCGGGCTACCTCCCGGAAGAGCCGCAAAGAAGGTTACTTGTCATGCTTGCCAAACGAGTAGAGGCATGGAGACTGTTGCCATGCCCTATGTATTCAGATATTTGGCTGCAGAGTTGGCTGCAATGAACATAAAAATGACTCTCAAGCTCACTGATGGAGCTGAAGTCGGAGCCTAA 3690 0.4043 MKMGLVFVLLTWFLLALENPVLYPPQKERFSRTMREALLPFEAIFLIFLFSEQCRQAKISYTGKLTVDVCFQYNDGPVIRETTNFGQFPIMLQSKLCNLRGADPKKLVSYKEEASEMGGYFVLNGLERVIRLLIMPKRNYPMSMVRNSFSERREGYTDKAVVIRCVRADQSSLSIRLYYLRNGSARLGFWLRGREYLLPVGIVLKALIRTSDREIYVKLTSCYNEKYAKGKGAVGTQLVGERAKIILDELRDLSLFTQDQCLEYIGEHFQPIMPELKQASYPIVAEAVLKDCILVHLDENFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNQEVLLPGHLISLYIKEKLEDWLQKGRRLLMDEIDKKNKKFDISDSMYIFDGYFGLLFLGFYIVLFASAFVVQIKKIMDKNSTKQVSSAVENMLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFISHFRSVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTRTCNDLDRGITSFFDSQGKIKDYFKIKKSIEDILKEVGMTPSVPNTPLPGPPEALTVLLDGCVVGCIASSEVEKVVAYIRALKVSSASVIPVDMEVGYVPLSMGGAYPGLYLFTSPARFVRPVKNISILPNGSENIEFIGPFEQVFMEIRCLDGGDGGRKSSFPATHEEIHPTEMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLYHLQTPQTPIVRTSTYSKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLTEQSKKSDQSSRTFRKSNVEKSAYPSIDSDGLPHVGQMIQPDEPYCSIYNEVTSSTRTFKRKGSEAVYVDYVAVDVKNTKHLQKVNIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFSGNTGMRPDLIINPHAFPSRMTIAMLLESVAAKVLYLICAVSVSLLKACMINDNFFLQGGSLRGEFVDATPFRSSVKKDGEGSDSKSDSLVDDLGLMLKEKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVNKFTALPIKSSTKGYFSIFSVIARRKCQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSMLTTTFIQPQKRPVRQIGGLPPGRAAKKVTCHACQTSRGMETVAMPYVFRYLAAELAAMNIKMTLKLTDGAEVGA 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00272 1229 Gene3D RNA polymerase alpha subunit dimerisation domain 1117 1226 - -
Vimu5g00272 1229 MobiDBLite consensus disorder prediction 797 811 - -
Vimu5g00272 1229 Gene3D - 322 545 - -
Vimu5g00272 1229 Pfam RNA polymerase I, Rpa2 specific domain 570 627 IPR009674 GO:0003899|GO:0005634|GO:0006351
Vimu5g00272 1229 CDD RNA_pol_B_RPB2 49 1220 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vimu5g00272 1229 MobiDBLite consensus disorder prediction 797 830 - -
Vimu5g00272 1229 FunFam DNA-directed RNA polymerase subunit beta 141 324 - -
Vimu5g00272 1229 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 50 1217 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vimu5g00272 1229 Gene3D - 1076 1116 IPR037033 GO:0003677|GO:0003899|GO:0006351
Vimu5g00272 1229 FunFam DNA-directed RNA polymerase subunit beta 1097 1222 - -
Vimu5g00272 1229 FunFam DNA-directed RNA polymerase subunit beta 322 548 - -
Vimu5g00272 1229 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 1088 1223 - -
Vimu5g00272 1229 ProSitePatterns RNA polymerases beta chain signature. 894 906 IPR007121 GO:0003677|GO:0003899|GO:0006351
Vimu5g00272 1229 Pfam RNA polymerase Rpb2, domain 2 157 335 IPR007642 GO:0003677|GO:0003899|GO:0006351
Vimu5g00272 1229 FunFam DNA-directed RNA polymerase subunit beta 686 785 - -
Vimu5g00272 1229 Gene3D - 17 140 - -
Vimu5g00272 1229 Pfam RNA polymerase beta subunit 51 369 IPR007644 GO:0003677|GO:0003899|GO:0006351
Vimu5g00272 1229 Pfam RNA polymerase Rpb2, domain 3 448 510 IPR007645 GO:0003677|GO:0003899|GO:0006351
Vimu5g00272 1229 Pfam RNA polymerase Rpb2, domain 6 685 1063 IPR007120 GO:0003677|GO:0003899|GO:0006351
Vimu5g00272 1229 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 45 1062 - -
Vimu5g00272 1229 Pfam RNA polymerase Rpb2, domain 7 1112 1220 IPR007641 GO:0003677|GO:0003899|GO:0006351
Vimu5g00272 1229 Gene3D RNA polymerase Rpb2, domain 2 141 321 IPR037034 GO:0003677|GO:0003899|GO:0006351
Vimu5g00272 1229 Gene3D - 716 890 IPR014724 GO:0003899
Vimu5g00272 1229 FunFam DNA-directed RNA polymerase subunit beta 783 890 - -
Vimu5g00272 1229 Gene3D - 686 1062 IPR037033 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00272 Vimu-Chr5 2514152 2536095 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00272 5 2514152 2536095 Vimu5g00272 5 2514152 2536095 ECH