Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00242 ATGGGGAGTAGAACTACCGGGAGTTTTGGTGTTGAAGATGACAAGGGAGCTGAAAGAGGAATGCCGAGCTTCAATTCTGAGTTACCTATTTCCAATTCTAGGTCTTCATTTGATGTTTGCTTACACCAGTGTTATGCAGACGGGAGCACAATTGATTCTTTTCGTGTTTCTGACTTTGGTGCATTTGATCAGCCATATCGCGTAGAGGATGCTGTTGGCCTTAGTGGAAAATCTCTTGAATGGTGGTTTGGGTTTGTGAAAAGGCTTCCCTTTGACCTAACGATGTTCTTTTGGGGCTTGTTGGGTAAGGTTACAACCAAGATCAAGATCCATTGTGTTGTTGACCATGGGGTGGGTCGCTGGGGAGCTTGTGCAGTTAAAAGGAGAGATTGTGTTGAAGGAGAGGTGGGTGTGGAGGCTGATGAGGACCCAATTTACAACTCACTAAAAGTAAGTAGCCAAACAATTTATCCGGGTTCTGTTCCCATTCATAGCCTTGATCAGTTGCCAACTTCACTTGATAAAAGCCCATTGACGAATCAAACAGAGCCGCATAGGTTGCGATTACAGAAGGTTCAATCATCAAATCCTGACACTATATTAGTTGGTAATACAGATAACCAGGAGGAGTCTGCGATGGCTGATGCCAGTCCCAGGACTGATATTTCTACAGATGTTGACACTGACGACAAAAATCAGCCGTTTGATAGAAATCAATCCCTTGCTATTGTTTCTGACTCTAGTGACAGGTCAAAAGATAAATCAGATCAGAAGACTCTCCGCAGGCTTGCCCAGAACCGTGAAGCTGCAAGAAAAAGCCGTTTGAGAAAGAAAGCCTATGTCCAACAGTTAGAAAGCAGTCGCTTGAAGCTGACCCAACTAGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGGATCTTCATATCAAGCTCGGGTGATCAAGCACATACACTAAGTGGAAATGGGGCAATGCAATTTGATGCAGAATATGCAAGATGGCTGGAAGAGCAGAATCGACAAATAAATGAGCTAAGAGCAGCTGTAAATTCTCATGCAAGTGACACTGAACTGCGCATGATTGTTGATGGTATATTGGCACATTACGATGAAATTTTTAGGTTGAAGGGTGTTGCAGCCAAGGCTGATGTTTTCCATCTGTTGTCTGGTATGTGGAAAACGCCTGCTGAGAGGTGCTTTTTGTGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTGCTGGCAAATCAATTGGAACCTCTGACAGAGCAGCAGCTGATGGGTATCACCAACTTGCAGCAATCTTCCCAACAGGCAGAAGATGCATTGTCTCAGGGTATGGAAGCATTGCAACAGTCCCTTGCGGAGACATTGTCCACTGGAGCACCTGCCTCATCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTAGGGACACTTGAAGGCTTCATTCGACAGGTACATTCTTCTTTTGCTTCTATGCAAATAGCTTGGCACAGTGCATCTCAACCACCAAAGCAAGAATCATTTGCTTACCTAGACCAACTCATTTTGGCCGATAATCTTCGCCAGCAGACTCTTCAACAAATGCACCGAATTCTGACGACTCGCCAATCGGCTCGCGCCCTCCTTGCCATACACGACTATTTTTCGCGGCTGCGTGCTCTCAGTTCGCTCTGGCTGGCTCGCCCAAGAGATTGA 1728 0.4601 MGSRTTGSFGVEDDKGAERGMPSFNSELPISNSRSSFDVCLHQCYADGSTIDSFRVSDFGAFDQPYRVEDAVGLSGKSLEWWFGFVKRLPFDLTMFFWGLLGKVTTKIKIHCVVDHGVGRWGACAVKRRDCVEGEVGVEADEDPIYNSLKVSSQTIYPGSVPIHSLDQLPTSLDKSPLTNQTEPHRLRLQKVQSSNPDTILVGNTDNQEESAMADASPRTDISTDVDTDDKNQPFDRNQSLAIVSDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHTLSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGAPASSGSSGNVANYMGQMAMAMGKLGTLEGFIRQVHSSFASMQIAWHSASQPPKQESFAYLDQLILADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00242 575 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 261 276 IPR004827 GO:0003700|GO:0006355
Vimu5g00242 575 ProSiteProfiles DOG1 domain profile. 323 572 IPR025422 GO:0006351|GO:0043565
Vimu5g00242 575 Coils Coil 334 354 - -
Vimu5g00242 575 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 256 300 IPR004827 GO:0003700|GO:0006355
Vimu5g00242 575 Coils Coil 277 304 - -
Vimu5g00242 575 MobiDBLite consensus disorder prediction 1 22 - -
Vimu5g00242 575 Pfam Seed dormancy control 340 415 IPR025422 GO:0006351|GO:0043565
Vimu5g00242 575 CDD bZIP_HBP1b-like 258 310 - -
Vimu5g00242 575 Pfam Basic region leucine zipper 254 300 IPR004827 GO:0003700|GO:0006355
Vimu5g00242 575 Gene3D - 257 308 - -
Vimu5g00242 575 MobiDBLite consensus disorder prediction 190 218 - -
Vimu5g00242 575 FunFam BZIP family transcription factor 257 306 - -
Vimu5g00242 575 MobiDBLite consensus disorder prediction 190 260 - -
Vimu5g00242 575 PANTHER TRANSCRIPTION FACTOR TGA9 200 574 - -
Vimu5g00242 575 SUPERFAMILY Leucine zipper domain 258 301 IPR046347 GO:0003700|GO:0006355
Vimu5g00242 575 SMART brlzneu 254 317 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00242 Vimu-Chr5 2308114 2317764 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu5g00242 DOG1 9.9e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00242 5 2308114 2317764 Vimu5g00242 5 2308114 2317764 ECH