Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00223 ATGTCTGAATTGGTGGCGCGTACGGGGCGGCATCAGCAGCGCTACGAGAACGGTTATCGGCTTGTTGCTGGATATAAAAGTTCTAATGGTGACTCCAGTTCCGAGAAGATTGTTCAAGTGCTTATGATTAATTCACCAAGTGGACCTGGGCTTTTGTTTCCAAAGGGAGGTTGGGAGAATGACGAAACTGTTGAGGAGGCAGCTGCAAGGGAAGCTGTAGAAGAAGCAGGAGTTCGAGGAGACCTAATGGATTTTCTTGGATATTATGAGTTTAGGAGTAAGACCCATCAAGATGAGTTTAGTCCAGAAGGTTTATGTAGAGCAGCAATGTTTTCCTTGTTTGTGAAGGAGGAACTTGAGTTTTGGCCTGAGCAAAGCACCAGAAATCGGAGTTGGCTAGATGTATCAGAGGCACTTGAAACCCTCCGGCATGCATGGATGAGGGACGCCCTGGAAGGCTTCTGTAAATGGCACGAGGATAAGTTGAATGAAACGAAAGGATAA 504 0.4643 MSELVARTGRHQQRYENGYRLVAGYKSSNGDSSSEKIVQVLMINSPSGPGLLFPKGGWENDETVEEAAAREAVEEAGVRGDLMDFLGYYEFRSKTHQDEFSPEGLCRAAMFSLFVKEELEFWPEQSTRNRSWLDVSEALETLRHAWMRDALEGFCKWHEDKLNETKG 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00223 167 FunFam Nudix hydrolase 16, mitochondrial 5 154 - -
Vimu5g00223 167 Pfam NUDIX domain 40 152 IPR000086 -
Vimu5g00223 167 ProSitePatterns Nudix box signature. 56 77 IPR020084 GO:0016787
Vimu5g00223 167 SUPERFAMILY Nudix 39 157 IPR015797 -
Vimu5g00223 167 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 5 156 - -
Vimu5g00223 167 ProSiteProfiles Nudix hydrolase domain profile. 18 155 IPR000086 -
Vimu5g00223 167 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 5 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00223 Vimu-Chr5 2099096 2102937 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00223 5 2099096 2102937 Vimu5g00223 5 2099096 2102937 ECH