Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00221 ATGATGGAGGAGGAGAAAGAAGAAGCAACCAACAACTACAACCTAGAACAAAACAAAAACCAAAACCTTAACCTAGACCACAACAACACTCTCCCAATCAAGGAAGAAACTGGTTTTAGATCAAAGGGTTTTGGAAGTGGTGACAGAGTGAAGAGAGATGAATGGAGTGAAGGAGCAGTGTCAACCCTTCTTGAAGCCTATGAAGCCAAATGGGTCCTCAGAAACAGAGCCAAACTCAAGGGCCATGACTGGGAGGACGTCGCTCGGCACGTGTCAGCACGTGCCAACTGCACCAAGTCACCCAAAACCTCCACACAGTGCAAGAACAAGGTCGAGTCCATGAAGAAGAGGTACAGATCAGAGTCTGCAACTGCAGAGCATCCCTCCTCCTGGCCTCTCTATTCACGCCTCGATCTTCTTCTCAGGGGAACTGGCCCTCTCCTCTCCTCACCGCCGCCGCCACCGCCGCCGCTCACGGGGGTGCTCGCGGTCCCCCCCTCTTCCGCAGAACCACCGCAACAGTCGCCGCCGTCAGAGCCACTTGCAGTTGTGCAGAACTCGCATGGATCCAATGGGGTTGATCAAAAGCTTGTCAAGGAAGATGTGTTAGGAGAAAAGTGTTGTGAAGAAGTATGTAGGAAGAATCCATTGGAGACAGATAGCAGCACTCCTGCAGTATACAGCAATAAGAAGGAAAAAAGGAAGAAGAAGGTGAATAATGATGAGAAGAGAAGAGGGAGAAGAAGGAAAGAGTATATGGAGATAGCAGAAAGCTTAAGATGGTTAGCAGAAGCTATGATAAGGTCAGAAGAAGGAAGAATGGAGACAATGAAAGAGATAGAGAGAATGAGAGTTGAAGCTGAGGCAAAGAGAGGGGAAATGGATCTCAAGAGAACTGAAATAATTGCCAACACACAGTTAGAGATTGCTAGAATCTTTGCTACTGTCAACAACAAACCTCTTGATTCTTCTCTAAGAATTGGAAGGAGTTAA 993 0.4753 MMEEEKEEATNNYNLEQNKNQNLNLDHNNTLPIKEETGFRSKGFGSGDRVKRDEWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVARHVSARANCTKSPKTSTQCKNKVESMKKRYRSESATAEHPSSWPLYSRLDLLLRGTGPLLSSPPPPPPPLTGVLAVPPSSAEPPQQSPPSEPLAVVQNSHGSNGVDQKLVKEDVLGEKCCEEVCRKNPLETDSSTPAVYSNKKEKRKKKVNNDEKRRGRRRKEYMEIAESLRWLAEAMIRSEEGRMETMKEIERMRVEAEAKRGEMDLKRTEIIANTQLEIARIFATVNNKPLDSSLRIGRS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00221 330 MobiDBLite consensus disorder prediction 218 249 - -
Vimu5g00221 330 Pfam Myb/SANT-like DNA-binding domain 52 139 IPR044822 -
Vimu5g00221 330 FunFam Trihelix transcription factor ASIL2 55 120 - -
Vimu5g00221 330 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 30 316 IPR044823 -
Vimu5g00221 330 MobiDBLite consensus disorder prediction 145 197 - -
Vimu5g00221 330 MobiDBLite consensus disorder prediction 13 35 - -
Vimu5g00221 330 MobiDBLite consensus disorder prediction 179 193 - -
Vimu5g00221 330 Coils Coil 6 26 - -
Vimu5g00221 330 Gene3D - 55 120 - -
Vimu5g00221 330 MobiDBLite consensus disorder prediction 147 162 - -
Vimu5g00221 330 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00221 Vimu-Chr5 2081074 2082773 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu5g00221 Myb_DNA-bind_4 3.7e-20 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00221 5 2081074 2082773 Vimu5g00221 5 2081074 2082773 ECH