Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00217 ATGAAAACCTCACCTATGCTGACTCCTCTGGTGCTCTTCCTCCTCTTCTCCCTAGCCAAAGGGCTGAACCCTAACTGTGATGTCCAAGAGCATGGCTCAACCCTTAAAGTGTTCCATGTGTTCAGCCCTTGTTCCCCATTCAAACCCTCAGAGGGTCTGTCATGGGAGGAGAGTGTCCTACAGCTAGAAGCCAAGGACCAGGCCAGGATGCAGTACCTTTCCAACTTGGTAGCTAGAAGGTCAGTTGTCCCAATTGCCTCGGGCAGACAAATCACACAGAGCCCTACATACATTGTTAAGGCCAAGATAGGTACCCCAGCTCAGACCCTTCTCTTGGCCATGGACACCAGCAATGATGCTGCCTGGGTCCCTTGCACTTCCTGTGTTGGTTGCTCTACACTCAAACCCTTTGCCCCTGCCAAATCCATCTCCTTCAACAAACTTCCATGTTCTGCTCCTCAGTGCAAACAGGTACCGAATCCCACTTGCGGTGGAAGCGCGTGTGCTTTCAACTTCACCTATGGCACTTCCTCTGTGGCAGCGGGTCTTGTCCAGGACACGATTACCCTAGCCACCGACCCAATTCCAGGCTACACCTTTGGATGCGTTCAAAAGGCAACAGGAAGGTCATTTCCAACACAGGGGCTATTGGGCCTGGGCCGAGGCCCATTGTCACTCTTGGCCCAAACCCAAAATCTCTACCGATCGACATTCTCCTACTGCTTGCCCAGCTTCAAAACACTCAACTTCAGTGGGTCACTGAGACTTGGGCCTGTGGCCCAGCCCAAGAGGATCAAGTTCACCCCTCTTCTCAAAAACCCTAGAAGGTCATCACTGTATTACGTGAACTTGGTGGCTGTTAGAGTTGGCCGGAGAATTGTTGATATCCCGCCGGAAGCTTTGGCGTTCAACCCCACCACCGGTGCCGGCACCATTTTCGATTCCGGTACGGTGTTCACCCGGCTGGTTGAACCGGCCTACACCGCCGTCCGGAACGAGTTCCGGCGGCGAGTCAGCGCGGGGAAGAAACTCACCGTGACAAGGCTAGGAGGGTTTGACACATGCTACACGGTCCCGATAGTTGCGCCAACCATAACGTTTATGTTCTCCGGCATGAACGTGACACTCCCGCCGGACAACACCCTGATACACAGCACCGCCGGCAGCATCACGTGCTTGGCCATGGCGGCGGCGCCCGACAACGTGAACTCGGTGCTGAACGTGATCGCCAACATGCAGCAACAAAACCACCGTGTGCTGTACGACGTGCCGAACTCAAGGATCGGTGTTGCTCGTGAACTTTGCACCTAA 1311 0.5446 MKTSPMLTPLVLFLLFSLAKGLNPNCDVQEHGSTLKVFHVFSPCSPFKPSEGLSWEESVLQLEAKDQARMQYLSNLVARRSVVPIASGRQITQSPTYIVKAKIGTPAQTLLLAMDTSNDAAWVPCTSCVGCSTLKPFAPAKSISFNKLPCSAPQCKQVPNPTCGGSACAFNFTYGTSSVAAGLVQDTITLATDPIPGYTFGCVQKATGRSFPTQGLLGLGRGPLSLLAQTQNLYRSTFSYCLPSFKTLNFSGSLRLGPVAQPKRIKFTPLLKNPRRSSLYYVNLVAVRVGRRIVDIPPEALAFNPTTGAGTIFDSGTVFTRLVEPAYTAVRNEFRRRVSAGKKLTVTRLGGFDTCYTVPIVAPTITFMFSGMNVTLPPDNTLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRVLYDVPNSRIGVARELCT 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00217 436 PANTHER ASPARTYL PROTEASES 22 429 IPR001461 GO:0004190|GO:0006508
Vimu5g00217 436 Gene3D Acid Proteases 74 257 IPR021109 -
Vimu5g00217 436 ProSiteProfiles Peptidase family A1 domain profile. 97 431 IPR033121 -
Vimu5g00217 436 Pfam Xylanase inhibitor N-terminal 97 257 IPR032861 -
Vimu5g00217 436 Gene3D Acid Proteases 258 436 IPR021109 -
Vimu5g00217 436 Pfam Xylanase inhibitor C-terminal 280 429 IPR032799 -
Vimu5g00217 436 FunFam aspartyl protease AED3 75 257 - -
Vimu5g00217 436 FunFam Aspartyl protease AED3 258 436 - -
Vimu5g00217 436 SUPERFAMILY Acid proteases 95 435 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00217 Vimu-Chr5 2050338 2052864 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00217 5 2050338 2052864 Vimu5g00217 5 2050338 2052864 ECH