Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu5g00215 | ATGACATTTGAAGGGATTAGTAATTGGCTTGGAAGGTTTTTTAGAGACGATGATTCAACATCCGCAGATGATGAAATTAGAGAGGTTAATGAAGATGATGAAATTGAAGAGATCTTGAATGAACATTTGTGTGAAGGCGAATATGCCAATGACTCAACTCTTTACAAAAACAAATTGTTTAACGGGCGAGGTAGGGATGACAGAGAAAATGTTGGACTGAGAGAGATCAAAGAGAAAAGGTTTAGAGGAATGAGGGAGGTGAGAAGGGGCATAGCTGAAGCCTTTTGGAAAAGAATGAACAAAGAGCTTACTGGTTTTGTGAAGGCTTGGGAAGCAGCAGTTAGGAAATCAGCAGGTCCAAAGAAGAGGGCAAGCAGCATCTTCACACCAATGTCTGTTGCCCATGTTGATGATGATGATGATGCAAGGAATGGTGGTGAGGTTTCCGTTACTCAGGTTGAGAAGATTCTCCCCAATGGCGACTTCTACACTGGGCAGTGGCTGGAGAATGGTCCTCATGGCCAGGGAAAGTATCTGTGGACAGATGGATGCATGTATGTTGGGGAATGGCAGAGGGGTGCAATCACGGGGAAAGGAAGGTTCAGCTGGCCCAGTGGTGCCACCTACGAGGGTGATTTCAAGAGTGGTTATATGGATGGGAAGGGCACTTACACAGGGTCTTCTGGGGACACCTATAAGGGTTGTTGGGTGATGGAGTTGAGACATGGCCAGGGAACTCAGAGCTACCTCAACGGGGACTTCTATGATGGGGAGTGGAGGAAGGGATTGCAGAATGGGCATGGGAGGTACCAGTGGAAGAATGGGAACCATTACATTGGACAGTGGAGGAATGGTGTGTTCTATGGGAATGGCACCATGATGTGGAGCAATGGGAATAGGTATGATGGTTCTTGGGAAGATGGATTGCCCAGGGGGAATGGCACATTCAGGTGGGGTGATGGGAGTTTCTATGTTGGGGTTTGGAGTAGAGATTCAAAAGAGCAAAGTGGAACATATTACCCTTCTGGCTCTTGTGTTGGCCATTTGGAGTGGGATCCTCAGGAGCTGTTCTCTGTGGACTTGGTGGAGTGCAGTATTTGTGCTTGTGAGAAGGTGGCAATTTACCCTTCACAGAAGAGTTTGAACATTTTGGATGGAGATAAGATGAGTAGGAAAGGAACTGATGTGAATGGTAGGACAAGGTGGAGTTCAGCCGATGCAAGGGTTAGCAATTACAGTTCTGAAGATGGTTCCCATGACGGCTCAAGGACTTCTCACGGTGATAATTCTGTACCAAGAGTGCCAAATTTGAGGTTGAAGCCTCCAAAGAAACAGGGAGAGACTATTTCTAAAGGGCATAAAAACTATGACCTCATGCTTAATCTGCAGCTTGGTATCAGCATTCGGCCTTTCATTGGTAGACTGATACCTTGTATTGCATCTTCTAAGGTTGTGCACAGACATGCTGTTGGAAGACCTGCTCCAAGTACATCTCTTGATTTGAAGTCTTCTGCATTTGATCCTAAAGAAAAAGTATGGACTAAATTTCCACCAGAAGGATCCAAGCACACGCCACCTCACTCCTCATGTGAGTTTAGATGGAAAGACTACTGCCCAGTAGTGTTCAGGGCTCTTAGAAAATTATTCAAAGTAGATCCTGCTGATTACATGATATCTTTATGTGGAAATGATGCCCTTCGGGAGCTCTCATCTCCTGGAAAAAGTGGAAGCTTTTTTTATTTGACAAATGATGACCGCTACATGATAAAGACCATGAAGAAAGCAGAAGTAAAAGTTTTCTTAAGAATGCTCCCTGGTTACTACAAACATGTTCGGGCTTTTGAGAATACTCTAGTCACCAAGTTCTTCGGTCTCCACTGTGTTAAGCTAACAGGAACTGCACAGAAGAAGGTTCGATTTGTCATCATGGGAAATCTATTCTGCTCACAATATGCCATCCATAGGCGCTTTGACTTGAAAGGTTCCACCTTTGGTCGCACAACGGATAAACCTGAGTCAGAAATAGAGCCTACAACAACACTTAAGGACCTTGATTTAAATTATATATTTCGGTTGCGGAAATCTTGGTTTCAAGAATTTTGCAGGCAAGTGAACAAGGACTGTGACTTTCTGGAACAGGAGAGGATCATGGATTATAGTATGTTGGTAGGTCTTCACTTTCGAGGAATCTCTTCTTGTGACAATGTTACTCCTTCTGGTTACAGTCCAGGCTCTACAACCCCAACTGGCAATGGTAACATGGGTGATGGAGCGCCCCGTCTTTCTGGAGTGGATGTGGATCATCTTGTTGTAGATCCTAGTCGGTGGATTCAGTTAGGTATAAACATGCCAGCAAGGGCTGAATCGACAGTGCGAAAAAGTTGTGACACCCCTCAGCTAGTTGGACAACCAACCGGTGAGTTATATGAGATCATCATCTTTTTCGGGATCATTGACATATTACAAGACTATGACATCAGTAAAAAGCTTGAGCATGCTTACAAAGCATTCCAATATGATGCAACAACAATCTCTGCTGTTGATCCAAGACTGTACTCTAGACGGTTTCGTGATTTCATCTTCAGAGTTTTTGTAGAGGACTAA | 2604 | 0.4428 | MTFEGISNWLGRFFRDDDSTSADDEIREVNEDDEIEEILNEHLCEGEYANDSTLYKNKLFNGRGRDDRENVGLREIKEKRFRGMREVRRGIAEAFWKRMNKELTGFVKAWEAAVRKSAGPKKRASSIFTPMSVAHVDDDDDARNGGEVSVTQVEKILPNGDFYTGQWLENGPHGQGKYLWTDGCMYVGEWQRGAITGKGRFSWPSGATYEGDFKSGYMDGKGTYTGSSGDTYKGCWVMELRHGQGTQSYLNGDFYDGEWRKGLQNGHGRYQWKNGNHYIGQWRNGVFYGNGTMMWSNGNRYDGSWEDGLPRGNGTFRWGDGSFYVGVWSRDSKEQSGTYYPSGSCVGHLEWDPQELFSVDLVECSICACEKVAIYPSQKSLNILDGDKMSRKGTDVNGRTRWSSADARVSNYSSEDGSHDGSRTSHGDNSVPRVPNLRLKPPKKQGETISKGHKNYDLMLNLQLGISIRPFIGRLIPCIASSKVVHRHAVGRPAPSTSLDLKSSAFDPKEKVWTKFPPEGSKHTPPHSSCEFRWKDYCPVVFRALRKLFKVDPADYMISLCGNDALRELSSPGKSGSFFYLTNDDRYMIKTMKKAEVKVFLRMLPGYYKHVRAFENTLVTKFFGLHCVKLTGTAQKKVRFVIMGNLFCSQYAIHRRFDLKGSTFGRTTDKPESEIEPTTTLKDLDLNYIFRLRKSWFQEFCRQVNKDCDFLEQERIMDYSMLVGLHFRGISSCDNVTPSGYSPGSTTPTGNGNMGDGAPRLSGVDVDHLVVDPSRWIQLGINMPARAESTVRKSCDTPQLVGQPTGELYEIIIFFGIIDILQDYDISKKLEHAYKAFQYDATTISAVDPRLYSRRFRDFIFRVFVED | 867 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu5g00215 | 867 | FunFam | Phosphatidylinositol 4-phosphate 5-kinase 8 | 239 | 283 | - | - | |
| Vimu5g00215 | 867 | Gene3D | - | 193 | 237 | - | - | |
| Vimu5g00215 | 867 | Gene3D | - | 147 | 192 | - | - | |
| Vimu5g00215 | 867 | Gene3D | - | 238 | 284 | - | - | |
| Vimu5g00215 | 867 | Gene3D | - | 285 | 335 | - | - | |
| Vimu5g00215 | 867 | ProSiteProfiles | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 467 | 864 | IPR002498 | GO:0016307|GO:0046488 | |
| Vimu5g00215 | 867 | MobiDBLite | consensus disorder prediction | 386 | 450 | - | - | |
| Vimu5g00215 | 867 | SUPERFAMILY | SAICAR synthase-like | 502 | 864 | - | - | |
| Vimu5g00215 | 867 | SMART | PIPK_2 | 502 | 865 | IPR002498 | GO:0016307|GO:0046488 | |
| Vimu5g00215 | 867 | SMART | morn | 184 | 205 | IPR003409 | - | |
| Vimu5g00215 | 867 | SMART | morn | 207 | 228 | IPR003409 | - | |
| Vimu5g00215 | 867 | SMART | morn | 230 | 251 | IPR003409 | - | |
| Vimu5g00215 | 867 | SMART | morn | 253 | 274 | IPR003409 | - | |
| Vimu5g00215 | 867 | SMART | morn | 161 | 182 | IPR003409 | - | |
| Vimu5g00215 | 867 | SMART | morn | 276 | 297 | IPR003409 | - | |
| Vimu5g00215 | 867 | SMART | morn | 299 | 320 | IPR003409 | - | |
| Vimu5g00215 | 867 | PIRSF | PIP5K_plant | 101 | 438 | IPR017163 | GO:0005524|GO:0016308 | |
| Vimu5g00215 | 867 | PIRSF | PIP5K_plant | 405 | 867 | IPR017163 | GO:0005524|GO:0016308 | |
| Vimu5g00215 | 867 | CDD | PIPKc_AtPIP5K_like | 455 | 863 | - | - | |
| Vimu5g00215 | 867 | Gene3D | - | 777 | 864 | - | - | |
| Vimu5g00215 | 867 | Gene3D | - | 646 | 753 | - | - | |
| Vimu5g00215 | 867 | Pfam | MORN repeat | 232 | 253 | IPR003409 | - | |
| Vimu5g00215 | 867 | Pfam | MORN repeat | 163 | 185 | IPR003409 | - | |
| Vimu5g00215 | 867 | Pfam | MORN repeat | 278 | 300 | IPR003409 | - | |
| Vimu5g00215 | 867 | Pfam | MORN repeat | 209 | 231 | IPR003409 | - | |
| Vimu5g00215 | 867 | Pfam | MORN repeat | 186 | 207 | IPR003409 | - | |
| Vimu5g00215 | 867 | Pfam | MORN repeat | 301 | 322 | IPR003409 | - | |
| Vimu5g00215 | 867 | Pfam | MORN repeat | 255 | 276 | IPR003409 | - | |
| Vimu5g00215 | 867 | SUPERFAMILY | Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain | 251 | 352 | - | - | |
| Vimu5g00215 | 867 | PANTHER | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE | 172 | 865 | IPR023610 | - | |
| Vimu5g00215 | 867 | SUPERFAMILY | Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain | 157 | 262 | - | - | |
| Vimu5g00215 | 867 | Pfam | Phosphatidylinositol-4-phosphate 5-Kinase | 561 | 862 | IPR002498 | GO:0016307|GO:0046488 | |
| Vimu5g00215 | 867 | Gene3D | Phosphatidylinositol Phosphate Kinase II Beta | 441 | 645 | IPR027484 | - | |
| Vimu5g00215 | 867 | MobiDBLite | consensus disorder prediction | 396 | 431 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu5g00215 | Vimu-Chr5 | 1991791 | 1997642 | Dispersed/Wgd |