Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00210 ATGGCTTCTTCTTCTTCTTCTTTGGTTGTTGTTGGGCCTCTTAACCTCACTCAGCAGAATGGTTACAAAGTGTGGGAAGATCCTTCTTTCATCAAGTGGAGGAAAAGGGACTCTCATGTCACCTTGCACTGCCATGACTCTCTAGAAGGATCTCTCAGATATTGGTATCAACGGAACAAAGTGGATTTTTTGGTTTCCCAGTCTGCTGTTTGGAATGATGATGCTGTTCAGGGGTCTCTTGATTGTGCTGCATTTTGGGTCAAAGATTTGCCTTTTGTTAAGTCCTTGTCTGGATATTGGAAATTTTTCATCGCTGACAGGCCCAGCAATGTTCCAACTAATTTTTACGAAAGCGAGTTCCACGATTCAGAGTGGAAAAATTTGCCTGTTCCTTCGAATTGGCAGTTACATGGATTTGATGTTCCTATATATACGAACGTGGTGTATCCATTTCCGCTAGATCCTCCTTTCGTTCCAAGTGAAAATCCTACTGGCTGTTACAGAACGTACTTCCAAATTCCTAAAGAATGGGAGGGTAGAAGAATTTTGTTGCATTTTGAAGCAGTTGATTCTGCCTTTTGTGCATGGATAAATGGGAATCCTGTTGGATATAGATCATACACAGTTGAACATGATATTACGTACTTGCTGGGGATAGATGATAAGATTTTCAAAGCAATGCAAGCCAGGGAGAAGGCATGTTATGAAATAGATAATAAATTGGACAGCCAAGACAGCAGACTACCTGCAGAGTTTGAAATCACTGAATTTTGTCATCCATGTGGTTCAGATGTTAAGAATGTTTTAGCTGTTCAAGTGTATAGATGGAGTGATGGCTCTTACCTTGAGGACCAGGACCAATGGCGGTTATCTGGTATCCACCGTGATGTTCTTCTTATGGCAAAGCCAGAGGTTGAAGTAAAATTAGATAGATTAAAAGAGACATCCAAGGATAATCTTCTCACAGACTACTCTATAGAAGCTACGTTGTTTGATTCTGGAAGCTGGTACACCTCTGATGGCAATCCTGATCTCCTTTCATCTAATGTGGCAGACATAAAGCTCCAATCATCAAGTACACCAGCACCAATATTAGGGTTTCATGGCTACTTGCTTACAGGGAAACTAAAATCACCAAAGCTTTGGTCTGCAGAGAAACCATACCTCTATACTCTGGTTGTTGTCCTGAAAGACCGATCTGGCCGTGTTGTTGACAGTGAATCATGTCCAGTAGGATTTAGACAAGTATCTAAAGCCCATAAACAACTGCTTGTTAATGGACATGCTGTTGTGATTAGAGGTGTGAACAGGCATGAACATCATCCTCAAGTGGGGAAGGCAAACATAGAATCATGCATGATCAAGGATTTGGTCTTGATGAAGCAAAATAATATTAATGCAGTGAGGAATAGCCATTATCCCCAACATCCACGTTGGTATGAGCTATGTGATCTGTTTGGCATGTATATGATAGACGAAGCCAATATTGAGACACACGGTTTTGACTATTCTAAACATCTCAAGCACCCTACTTTGGAACCAATTTGGGCATCTGCAATGCTGGATCGTGTGATTGGCATGGTTGAGAGAGATAAAAATCACGCATGCATTATTTCATGGTCTCTAGGGAATGAATCTGGATTTGGAACAAATCATTATGCTTTAGCTGGCTGGATTCGAGGACGAGATTCATCACGGGTATTACATTATGAAGGAGGTGGATCCAGGACTCCATGCACTGATATTGTTTGTCCTATGTATATGCGTGTTTGGGACATGGTGAAAATAGCCAATGATCCAACTGAAATACGTCCTCTGATACTATGCGAATATTCACATGCAATGGGAAACAGTAATGGAAATCTTCATATATATTGGGAAGCAATTGACAACACATTTGGACTCCAAGGAGGCTTTATTTGGGATTGGGTTGATCAGGCGCTGGTGAAAGTTTATGAGGATGGTACAAAGCATTGGGCATATGGAGGTGAATTCGGGGATGTTCCCAATGATTTGAATTTTTGTTTGAATGGGCTCACATTTCCTGATCGAACTCCTCATCCTGTTTTACATGGAGTGACAATTCGTGTTTCTGTTTATATCATTAGTCATGCTTCATCAATATGCCTTTTTGTTTCAGAGGTTAAGTACTTGTACCAACCAATCAAGGTGGCTTTAAATGAAGGGAAATTGGAGATAAAAAATACTCATTTTTTTCAAACAACAGAAGGATTGGAGTTCAGCTGGTATATTTCTGCAAATGGATATAACCTTGGATCTGGTATTTTGGACCTTGCCTCTATAAAGCCCCAGAATAGTTATGCTGTTGATTGGAAATCAGGTCCATGGTATTCTCTGTGGGCTTCATCATCAGAAGAAGAACTATTCTTGACATTAACGGTTAAACTTTTGGACTCCACACGTTGGGTTGAAGCTGGTCACATTATTTCATCTGCTCAAGTTCAACTGCCTGCCAGGAGAAACATTCTTGTGCATGCTATTGCTACTAGTGCTGGCAATCTGGTTGCTGAAACACAAGGAGATACAATTATAGTCAAAAAGCAAGATTTTTGGGATTTGACATTGAATACTAAAACAGGTTTAGTTGAAAGCTGGAAGGTTAAAGGAGTACATATTTTGAAAAAGGGCATCCTCCCATGTTTCTGGCGAGCTCCTATAGATAATGATAAAGGAGGAGAGGGAGCCAGTTATTTGTCCAGGTGGAAAGCTGCTGGAATGGACTGCCTCCACTTCATTGCTGAGAGCTGTTCTGTGCAAAGTATTACAGAAAACTCAGTTAGAATATTGGTGGTTTTTCTTGGTGTTACAAAGGGTGCTGAGGGTTCTCTCTCTAACCAAGACAAGTCAAAGGTATTATATACTACAGAAGTGACATATACAATTTTTGCTTCTGGGGATGTTATTATAGAATGCGAAGTGAAGCCAAATCCTGATCTCCCTCCTTTACCACGTGTGGGAATTGTGTTAAATGTGGAAAAGTCATTGGATCTAGTAACTTGGTATGGAAGAGGACCATTTGAGTGTTATCCGGATCGAAAAGCTGCAGCCCAAGTTGCAGTCTATGAACATAATGTTAGTGAGTTGCATGTTCCTTATATTGTTCCTGGGGAATCTTCTGGCAGGGCAGATGTTAGGTGGGCAACATTCAGAAACAAAAATGGTTTTGGAATATATGCTTCTAAGTATGGTATCTCTCCACCCATGCAAATGAGTGCAAGCTACTATAGCACCTCAGAACTTGAACGTGCCACACACAATGAAGAGCTCATTGAAGGAGATAGCATTGAGGTTCATCTGGATCACAAGCATATGGGGTTAGGTGGAGATGATAGTTGGTCGCCATGTGTCCACAATTCTTATTTGATTCCTCCTGTGTCACACTCATTCTCTGTTAGATTGTGTCCTGTAACTCCAGACACTTCTGGGTATGACATCTACAAATCCCAGCTTCAAAACTCTTGA 3483 0.4083 MASSSSSLVVVGPLNLTQQNGYKVWEDPSFIKWRKRDSHVTLHCHDSLEGSLRYWYQRNKVDFLVSQSAVWNDDAVQGSLDCAAFWVKDLPFVKSLSGYWKFFIADRPSNVPTNFYESEFHDSEWKNLPVPSNWQLHGFDVPIYTNVVYPFPLDPPFVPSENPTGCYRTYFQIPKEWEGRRILLHFEAVDSAFCAWINGNPVGYRSYTVEHDITYLLGIDDKIFKAMQAREKACYEIDNKLDSQDSRLPAEFEITEFCHPCGSDVKNVLAVQVYRWSDGSYLEDQDQWRLSGIHRDVLLMAKPEVEVKLDRLKETSKDNLLTDYSIEATLFDSGSWYTSDGNPDLLSSNVADIKLQSSSTPAPILGFHGYLLTGKLKSPKLWSAEKPYLYTLVVVLKDRSGRVVDSESCPVGFRQVSKAHKQLLVNGHAVVIRGVNRHEHHPQVGKANIESCMIKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGMYMIDEANIETHGFDYSKHLKHPTLEPIWASAMLDRVIGMVERDKNHACIISWSLGNESGFGTNHYALAGWIRGRDSSRVLHYEGGGSRTPCTDIVCPMYMRVWDMVKIANDPTEIRPLILCEYSHAMGNSNGNLHIYWEAIDNTFGLQGGFIWDWVDQALVKVYEDGTKHWAYGGEFGDVPNDLNFCLNGLTFPDRTPHPVLHGVTIRVSVYIISHASSICLFVSEVKYLYQPIKVALNEGKLEIKNTHFFQTTEGLEFSWYISANGYNLGSGILDLASIKPQNSYAVDWKSGPWYSLWASSSEEELFLTLTVKLLDSTRWVEAGHIISSAQVQLPARRNILVHAIATSAGNLVAETQGDTIIVKKQDFWDLTLNTKTGLVESWKVKGVHILKKGILPCFWRAPIDNDKGGEGASYLSRWKAAGMDCLHFIAESCSVQSITENSVRILVVFLGVTKGAEGSLSNQDKSKVLYTTEVTYTIFASGDVIIECEVKPNPDLPPLPRVGIVLNVEKSLDLVTWYGRGPFECYPDRKAAAQVAVYEHNVSELHVPYIVPGESSGRADVRWATFRNKNGFGIYASKYGISPPMQMSASYYSTSELERATHNEELIEGDSIEVHLDHKHMGLGGDDSWSPCVHNSYLIPPVSHSFSVRLCPVTPDTSGYDIYKSQLQNS 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00210 1160 SUPERFAMILY Galactose mutarotase-like 839 1143 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vimu5g00210 1160 Pfam Glycosyl hydrolases family 2 305 414 IPR006102 GO:0004553|GO:0005975
Vimu5g00210 1160 SUPERFAMILY Galactose-binding domain-like 90 207 IPR008979 -
Vimu5g00210 1160 ProSitePatterns Glycosyl hydrolases family 2 signature 1. 466 491 IPR023230 -
Vimu5g00210 1160 PANTHER BETA-GALACTOSIDASE 18 217 - -
Vimu5g00210 1160 Pfam Beta-galactosidase, domain 4 731 824 IPR032312 -
Vimu5g00210 1160 Pfam Beta galactosidase small chain 857 1140 IPR004199 GO:0004565|GO:0005975|GO:0009341
Vimu5g00210 1160 Gene3D Immunoglobulins 720 828 IPR013783 -
Vimu5g00210 1160 SMART Bgal_small_N_2 851 1141 IPR004199 GO:0004565|GO:0005975|GO:0009341
Vimu5g00210 1160 ProSitePatterns Glycosyl hydrolases family 2 acid/base catalyst. 531 545 IPR023232 -
Vimu5g00210 1160 SUPERFAMILY beta-Galactosidase/glucuronidase domain 716 826 IPR036156 -
Vimu5g00210 1160 Gene3D - 835 1142 IPR014718 GO:0030246
Vimu5g00210 1160 Gene3D Glycosidases 416 695 - -
Vimu5g00210 1160 SUPERFAMILY (Trans)glycosidases 419 692 IPR017853 -
Vimu5g00210 1160 SUPERFAMILY Galactose-binding domain-like 243 303 IPR008979 -
Vimu5g00210 1160 FunFam Beta-galactosidase 415 696 - -
Vimu5g00210 1160 Pfam Glycosyl hydrolases family 2, TIM barrel domain 420 693 IPR006103 GO:0004553|GO:0005975
Vimu5g00210 1160 SUPERFAMILY beta-Galactosidase/glucuronidase domain 366 414 IPR036156 -
Vimu5g00210 1160 Gene3D - 14 299 - -
Vimu5g00210 1160 PRINTS Glycosyl hydrolase family 2 signature 604 619 IPR006101 GO:0004553|GO:0005975
Vimu5g00210 1160 PRINTS Glycosyl hydrolase family 2 signature 189 204 IPR006101 GO:0004553|GO:0005975
Vimu5g00210 1160 PRINTS Glycosyl hydrolase family 2 signature 531 546 IPR006101 GO:0004553|GO:0005975
Vimu5g00210 1160 Gene3D Immunoglobulins 300 414 IPR013783 -
Vimu5g00210 1160 Pfam Glycosyl hydrolases family 2, sugar binding domain 242 303 IPR006104 GO:0004553|GO:0005975
Vimu5g00210 1160 Pfam Glycosyl hydrolases family 2, sugar binding domain 94 213 IPR006104 GO:0004553|GO:0005975
Vimu5g00210 1160 FunFam Glycoside hydrolase family 2 protein 840 1142 - -