Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00209 ATGCGAAAGGGAAATTCTGAAACCGATGCTGGACTTGTTGGTCATATTTATCTGGACGAGATGATGTTAGAAGAGCTGAAGATCAGCATGGCCAACATTTTTCAGAAATGCTCGGATAGACTAAAATCCTTTAGTCGGAGAAAGAAAGCTAATGAATTTCTGAATAGGACCGAATTGTCGTTTAGTGAGTCTTGCTCGGGTTCGCATTCTTCTGCCCCGTGTTTAACATTCATTTGGGTTGATGATCGTAATAATGAATTTCATCGCATTGTAAAGATCCTATCGGAAGAAATCTGCCCTGTGCTGTTAGATACAATAATCCAAGGAGACCCACGCATTAGCTCTGCAAGTATAATTTGGGTTAGTCCGGATACCAACACATGGGTTAGAAACCCTTATAAATCTTCTAATGGTGAACTGGCACTGGATATTATTCTTGAGAAGGAAGTAGTCAAGCAGAGTGGTGATGCTTGGAGGATTGTACTTGATTCCTGCCTTCCTGTTCTTCATTTGATTGATACCAGGCGTTCAATCCCATACGCTATTAAGCAGATTCAAGAATTGTTGGGGATATCTTGCACTTTTGATCAAGCGATTCAGCGTGTTGCGGCATCTGTGAAAATGGTGGCAAAAGGTGTTCTTAGAGAGCATCTAATTTTGTTAGCTAGTAGTATGACATGTGGTGGGAACCTGGTTGGCTTTAACACAGGGGGATATAAAGCCCTCTGTCGACAACTAAATATTCAAGTACCATTCACAGATGCAACACTCTTTACACCTAAAAAATGTTTTGAGCGAGCTGCTGCGAAATGTCATACTGACTCTCTGTCAAGCATAGTTGCATCCTGTTCCTGGGGTAAACATGTGGCAGTTGGTACAGGATCAAAATTTGATGTTGTTTGGGATACAAATAAGATAAGATCAAGTGAAATTAAAGGAATGGATGTTTACAGTTTTCTTCACATGGTTGGAGGTCGTACTGATGGGGAAGAAGAAACTGATGCTTGTTTGGGTGAAGATATTGACGATTTGCTGGAAGAAGAAAATTTGAATTTGGAAATGTCCTCACCACATAACTCTGGTTTTGAGGCCGTCTTCGAAGACAATCCCGAAGTACTGAATGATTCAACATCCAATGGTTGGGATGTAAATTTAAATCAGACTGAATCAAAATCAAATGGTTGGGGTGCAAACATAACAGGTCAGACAAACACAAATTCTAATGAATGGTCTGGCTGGGGAAACAATAATTCTGAAATACCAGCCAGTGGAACCGAAAATATGCAAGGCTCTTGGGGCTCTGGTAGGAGGAAAGATGTAACCCAAGAAGACAATTTTGCATCTGGTGGTTGGGGTGCAAACAGAACAGATCATACAGAAACAAAATCTAATGACTGGGGAAAGAATAATAAGTCTGAAATACTTGCTAGTGGATCTGAAAAAGAAGATTCTTGGGACTCGAGTAAATTGAAAGATGATGTAAGAAAAAACAGTATTGGTTCTAGTGCTTGGGATGCAGGAAACACAGGTCAGACAAAAGCAAAATCTAGTGAATGGTCTGGATGGGGAAATAATAAGTCTGAAATACCAGCTGGTGGATCAGAAAATGTGCGAGATTCCTGGGGCTCTGACAAGGGGAAAGATGATGTTACCCAAGTAGACAACTCCGCATATGGTTCTTGGGGTGGAAACAGAAGAGATCAGACAAAAGCAAAATCTAATGAAGGGTCAGGTTGGGGAAGAAATCAATCAGAAATGCAACCTGGAGGATCTAAAAATGTAAGAGAAGATTCTTGGGGCTCAGGTAAATTGAAAGATGATACCCAAAATGACAATTCTGAGTCTGGTGCCTGGGGTGCAAGCAGCAAAGGCCAGATAGAATCAAAATCTAATGAATGGTCAGGCTGGGGGAAGAATAAGTCTGAAAAAGCTGGTGAATTTGAAAATGTGCAGGATTCTTGGGGCTCTAGTAAGAGGAAAGATGTTACCCGAGTAGACAACTCTGTGTCTGGTTCTTGGAGTGGAAGCAGAGGAGATCAAACTAACACAAAATCTAATGAATGGTCTGGCTGGGGAAGGAATAAATCGGTGATACCAGCTAGCGGAACTGAAAATGCACAAGATTCTTGGGGCTCAAGTATATTGAAAGATGATGTTACCCAGAAAGATAATTCCACCTCTGGTTCTTGGGGTGCAAACAAAACAAGTTTGAAAAAAACTGAAGTAAATGAGTGGGCTAGAAATAAAGTTGAGGCAATAGATGGTGGATCAGAAAAGCCCCAAGAAGATTCTTGGAACTCAGGTAATTGGAAAGCTAACTCAAAAGTTGGCAATACCTCTTGGGGAAAAGCCAAATCCTCTGGAAGTCAATCATGGGATTCCCAAAATCAGTCAAATCAAAATTCAACTTCACGGGGATGGGAATCACATATTGCTTCAGCTAATTCAGATAGTGAGAAAGGTTTTCAGTGGGGTAAGCAAGGTAGAGATTCTTTCAAGAAAAATCGCTTTGAAGGTTCACAAGGTCGGGGTACAAATGGTGGCGACTGGAAAAATAGGAATCGCCCACCAAGACCACCTGGACAGAGATTGGACTTATATTCATCTGAGGAGCAGGATGTGCTGAAGGAGATCGAACCTATTATGCAGTCTATCAGACGAATCATGCAACAACAGGGGTACAACGATGGTGACCCGCTGGCTGCTGAAGATCAACAATTTATACTTGAGAATGTCTTTGAGCACCACCCAGATAAAGAAACCAAAATGGGTGCTGGAATTGATTATGTCATGGTCAACAGACACGGCAGTTTTCAGGATAGCAGATGCTTTTTCGTGGTTTTGAAAGATGGTCGAAGAGAAGATTTTTCCTACCGTAAATGCTTGGATAACCGGATAAGAAAGAAGTATCAAGCAGACCTTGCTGAAGCATTCGTCAATAAATATTTTCGAGTTTACCGTAATAGGGGGGACCAAACTGCAAACCCAAGGGGGGACCAGAGTGGAACGGCAGTGCAGGATGAAGCTTCTACACCGGCTGACCAGACCTCAATACTCGGCCCTGGCCCTGTGGAAACGAATGAGTAG 3087 0.4192 MRKGNSETDAGLVGHIYLDEMMLEELKISMANIFQKCSDRLKSFSRRKKANEFLNRTELSFSESCSGSHSSAPCLTFIWVDDRNNEFHRIVKILSEEICPVLLDTIIQGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIILEKEVVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALCRQLNIQVPFTDATLFTPKKCFERAAAKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDTNKIRSSEIKGMDVYSFLHMVGGRTDGEEETDACLGEDIDDLLEEENLNLEMSSPHNSGFEAVFEDNPEVLNDSTSNGWDVNLNQTESKSNGWGANITGQTNTNSNEWSGWGNNNSEIPASGTENMQGSWGSGRRKDVTQEDNFASGGWGANRTDHTETKSNDWGKNNKSEILASGSEKEDSWDSSKLKDDVRKNSIGSSAWDAGNTGQTKAKSSEWSGWGNNKSEIPAGGSENVRDSWGSDKGKDDVTQVDNSAYGSWGGNRRDQTKAKSNEGSGWGRNQSEMQPGGSKNVREDSWGSGKLKDDTQNDNSESGAWGASSKGQIESKSNEWSGWGKNKSEKAGEFENVQDSWGSSKRKDVTRVDNSVSGSWSGSRGDQTNTKSNEWSGWGRNKSVIPASGTENAQDSWGSSILKDDVTQKDNSTSGSWGANKTSLKKTEVNEWARNKVEAIDGGSEKPQEDSWNSGNWKANSKVGNTSWGKAKSSGSQSWDSQNQSNQNSTSRGWESHIASANSDSEKGFQWGKQGRDSFKKNRFEGSQGRGTNGGDWKNRNRPPRPPGQRLDLYSSEEQDVLKEIEPIMQSIRRIMQQQGYNDGDPLAAEDQQFILENVFEHHPDKETKMGAGIDYVMVNRHGSFQDSRCFFVVLKDGRREDFSYRKCLDNRIRKKYQADLAEAFVNKYFRVYRNRGDQTANPRGDQSGTAVQDEASTPADQTSILGPGPVETNE 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00209 1028 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 89 304 - -
Vimu5g00209 1028 MobiDBLite consensus disorder prediction 386 436 - -
Vimu5g00209 1028 MobiDBLite consensus disorder prediction 740 758 - -
Vimu5g00209 1028 MobiDBLite consensus disorder prediction 611 637 - -
Vimu5g00209 1028 PANTHER DNA-DIRECTED RNA POLYMERASE 4 301 IPR045867 GO:0003899|GO:0006351
Vimu5g00209 1028 MobiDBLite consensus disorder prediction 501 531 - -
Vimu5g00209 1028 MobiDBLite consensus disorder prediction 666 739 - -
Vimu5g00209 1028 MobiDBLite consensus disorder prediction 639 665 - -
Vimu5g00209 1028 MobiDBLite consensus disorder prediction 386 866 - -
Vimu5g00209 1028 MobiDBLite consensus disorder prediction 475 498 - -
Vimu5g00209 1028 MobiDBLite consensus disorder prediction 760 822 - -
Vimu5g00209 1028 Pfam Protein of unknown function (DUF3223) 893 962 - -
Vimu5g00209 1028 MobiDBLite consensus disorder prediction 553 591 - -
Vimu5g00209 1028 MobiDBLite consensus disorder prediction 823 837 - -
Vimu5g00209 1028 Gene3D - 872 969 - -
Vimu5g00209 1028 MobiDBLite consensus disorder prediction 993 1028 - -
Vimu5g00209 1028 MobiDBLite consensus disorder prediction 990 1028 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00209 Vimu-Chr5 1906836 1923573 Dispersed