Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu5g00202 | ATGGCGGAAACCGCAATTTTCTTCGCCGCCACCGGAGAACCTCCTCTGCTACGATTCTTCAACAGCACCTTTCTCTACTTCAAACGGAACCTCATCGCTCACATTTTCCGCCCTCTAAACGCCCGTTGTTCTGTGGTTGGTTGCAGGATTTGCTGTGACGTGGACGCGGCGATTGAGAAAAAGTGCGACGTGTACGCGAGAGATTCTTCGTCGAACGACAGGAGTTTCGGCGCGGACGAGAATGGACGGCACGCCGTTTTCAATGTGCTGGACACTATGCTTAAGGATAGTTTAGAGCGGCTGAAGATGATGAGGGAAAATCTATGTTTGGTAAAGATAGGTCTAACTATGGGATATGCTTGTGAATTCAAGTATGCTGAACACACAGCTACTATTAGGAGTTTGTGCTTGGACAGTAAGTTGGTAGCAGCTCTTTGGCTTCGGAGGAAAATGGTTATGAAAGGTGTTGTTCCTGATGTGTTTACCCACAACCATATTGTAAACGGGCTGTGCAAAATTCGTTTTCTGGAGAAAGCAGATTGGATTGTTGCAGAGATGTTAGAAAAGGGTCCTCGTCCCAATTGTGCGACTTATAACACTTTGATTAAGGGCTATTGCACTGTTAATGACATGGACAGGGCTTTGTTTCTGTTCTCCACCATGTCCAATGCTAGGGTTCCGCCAAACAGGGTTACTTGTAGTATACTGGTGCGTGCTCTGTGTGAGAAAGGTCTTCTAAAGGGAGCTAAAAGGACTAAAAGGATGCTCGAAGAAATATTGAAGGATGATGACGAGAAAGATATAACTAATTTAGTAACCTCTACTATATTTATGGATAACTACTTTAAGAAAGGAGCAATTTTTCAGGCTCTTAGTCTTTGGAATCAGATGGTTCAGAATTGTACTAAAGTTGATGTTGTAGCTTATAATGTTCTTATCCATGGCTTTTGCAAGAGTCTACAAATGAACCTTGCATATGGATATACATGCGAGATGTATAAGAAAGGTTTACTTCCTGATGTTTTTACCTATAATATTCTTATAGGTGCTCTTTGCAAGGAAGGTAAAACTAGTGAGGCTTGCTATACCCTTGGAGTCATGTCTAGTATGGGAATTATGCCCGATCAAATTACATACCAGCTTGTGATTCGAGGTCTTTGTTTTGATGGAGAGATTGCTAGAGCAGAAAGCTTGCTTTGGTCTATGTTGAACAATTTAATAGTGCCGAAGCCTTTAATATGGAACCTACTAATTGACTTCTACGGACGATATGATGATCTTAGCAATGCACTTTTTACAAGAAATCAGATGCTAGATTTTGGTGTTCCCCCAAATGTATTTACTTACAATGCTTTAATTCTTGCACATGTGAAGAATGACAATTTCAGTCGTGCTTGCACTCTGAAGGAAGAAATGCTTTCAAAGGATATTTTTCCTGATGTTGTTACCTATAATTTATTGATAGGTGCCGCCTGTAATTTAGGACGTCGAGATTTTGTTTTTCAATTACATGATGAGATGGTGCAGAGAGGGTATGAACCAGATTTAATAACTTACACTGAAATTGTTAAGGTGTGCTGTATTAGAGGTAAGATGAAAGAGGCAGAGGAGCTATATGATGCCAAAATACTAAAATCTGGTTTATTGAATGATCATGTTCCAGTGCAGATTCTTTTTAACAAGTACTGCAAAATGAAGGAACCAGTTAAAGCATTTTATTTCTATCAAGACTGGTTAGAAAGTAAAAGGGGAAGTCATCCGTATTAA | 1767 | 0.4012 | MAETAIFFAATGEPPLLRFFNSTFLYFKRNLIAHIFRPLNARCSVVGCRICCDVDAAIEKKCDVYARDSSSNDRSFGADENGRHAVFNVLDTMLKDSLERLKMMRENLCLVKIGLTMGYACEFKYAEHTATIRSLCLDSKLVAALWLRRKMVMKGVVPDVFTHNHIVNGLCKIRFLEKADWIVAEMLEKGPRPNCATYNTLIKGYCTVNDMDRALFLFSTMSNARVPPNRVTCSILVRALCEKGLLKGAKRTKRMLEEILKDDDEKDITNLVTSTIFMDNYFKKGAIFQALSLWNQMVQNCTKVDVVAYNVLIHGFCKSLQMNLAYGYTCEMYKKGLLPDVFTYNILIGALCKEGKTSEACYTLGVMSSMGIMPDQITYQLVIRGLCFDGEIARAESLLWSMLNNLIVPKPLIWNLLIDFYGRYDDLSNALFTRNQMLDFGVPPNVFTYNALILAHVKNDNFSRACTLKEEMLSKDIFPDVVTYNLLIGAACNLGRRDFVFQLHDEMVQRGYEPDLITYTEIVKVCCIRGKMKEAEELYDAKILKSGLLNDHVPVQILFNKYCKMKEPVKAFYFYQDWLESKRGSHPY | 588 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu5g00202 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 340 | 374 | IPR002885 | - | |
| Vimu5g00202 | 588 | Pfam | PPR repeat family | 305 | 353 | IPR002885 | - | |
| Vimu5g00202 | 588 | Pfam | PPR repeat family | 193 | 241 | IPR002885 | - | |
| Vimu5g00202 | 588 | Pfam | PPR repeat family | 444 | 493 | IPR002885 | - | |
| Vimu5g00202 | 588 | Pfam | PPR repeat | 154 | 179 | IPR002885 | - | |
| Vimu5g00202 | 588 | Pfam | PPR repeat | 370 | 402 | IPR002885 | - | |
| Vimu5g00202 | 588 | NCBIfam | pentatricopeptide repeat | 482 | 515 | IPR002885 | - | |
| Vimu5g00202 | 588 | NCBIfam | pentatricopeptide repeat | 307 | 341 | IPR002885 | - | |
| Vimu5g00202 | 588 | NCBIfam | pentatricopeptide repeat | 197 | 229 | IPR002885 | - | |
| Vimu5g00202 | 588 | NCBIfam | pentatricopeptide repeat | 342 | 375 | IPR002885 | - | |
| Vimu5g00202 | 588 | NCBIfam | pentatricopeptide repeat | 447 | 481 | IPR002885 | - | |
| Vimu5g00202 | 588 | NCBIfam | pentatricopeptide repeat | 161 | 195 | IPR002885 | - | |
| Vimu5g00202 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 515 | 550 | IPR002885 | - | |
| Vimu5g00202 | 588 | SUPERFAMILY | TPR-like | 171 | 543 | IPR011990 | GO:0005515 | |
| Vimu5g00202 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 159 | 193 | IPR002885 | - | |
| Vimu5g00202 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 305 | 339 | IPR002885 | - | |
| Vimu5g00202 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 375 | 409 | IPR002885 | - | |
| Vimu5g00202 | 588 | Gene3D | Tetratricopeptide repeat domain | 115 | 270 | IPR011990 | GO:0005515 | |
| Vimu5g00202 | 588 | Gene3D | Tetratricopeptide repeat domain | 455 | 587 | IPR011990 | GO:0005515 | |
| Vimu5g00202 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 445 | 479 | IPR002885 | - | |
| Vimu5g00202 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 480 | 514 | IPR002885 | - | |
| Vimu5g00202 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 194 | 228 | IPR002885 | - | |
| Vimu5g00202 | 588 | Pfam | PPR repeat | 413 | 442 | IPR002885 | - | |
| Vimu5g00202 | 588 | Pfam | PPR repeat | 272 | 300 | IPR002885 | - | |
| Vimu5g00202 | 588 | Gene3D | Tetratricopeptide repeat domain | 274 | 439 | IPR011990 | GO:0005515 | |
| Vimu5g00202 | 588 | PANTHER | RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED | 120 | 405 | - | - | |
| Vimu5g00202 | 588 | Pfam | Pentatricopeptide repeat domain | 503 | 538 | IPR002885 | - | |
| Vimu5g00202 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 410 | 444 | IPR002885 | - |