Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00197 ATGATAGCTTCCCATTTAAAATGTCACACTCTTGTTGTTCATCACACACATCTCTGTTCCTATTTTCTTTTCTTCATCTGTTTCTTTATATTCTCTTTTCAGTTATCAATCATGGCTATGGCTTTAGAGACTCAGTTCCATGTTTTGGCTGTTGATGACAGTCTCATTGACAGAATGTTGATTGAGAGACTCTTGAAAACCTCTTCCTTCAATGTTACTACAGTTGATTCTGCTACCAAGGCCTTAAAGTTTCTTGGTTTGGTTGAAGATGAATTCAGGACTTTTGAATCTTCTGTTGCATCAGAAATTCATCAGGATGTGAATGTTAACCTGATTATAACAGATTACTGTATGCCAGGAATGACTGGTTATGATCTGCTGAGAAAAATCAAGGAATCTAAATCACTTAAAAACATACCAGTTGTGATTATGTCCTCTGAGAATGTGCCATCAAGGATCAACAGATGTTTGGAAGAAGGAGCAGAGGAATTCTTTCTGAAACCAGTTCAACAAGCAGATGTGAATAAGCTGAAGCCACATTTGATGAAATCAAGAACAAAAGAAGAGAATGAGCAACCATTGAATAACAAAAGAAAGGAAATGGAAGAAATTTATTCTCCAAACAAAACCAGATTGAGATGTAGCAGTTAG 651 0.3594 MIASHLKCHTLVVHHTHLCSYFLFFICFFIFSFQLSIMAMALETQFHVLAVDDSLIDRMLIERLLKTSSFNVTTVDSATKALKFLGLVEDEFRTFESSVASEIHQDVNVNLIITDYCMPGMTGYDLLRKIKESKSLKNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQQADVNKLKPHLMKSRTKEENEQPLNNKRKEMEEIYSPNKTRLRCSS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00197 216 Gene3D - 47 213 - -
Vimu5g00197 216 Pfam Response regulator receiver domain 48 174 IPR001789 GO:0000160
Vimu5g00197 216 SUPERFAMILY CheY-like 45 185 IPR011006 -
Vimu5g00197 216 MobiDBLite consensus disorder prediction 181 216 - -
Vimu5g00197 216 PANTHER TWO-COMPONENT RESPONSE REGULATOR 46 196 IPR045279 GO:0009736
Vimu5g00197 216 CDD REC_typeA_ARR 48 177 - -
Vimu5g00197 216 ProSiteProfiles Response regulatory domain profile. 47 182 IPR001789 GO:0000160
Vimu5g00197 216 SMART REC_2 46 181 IPR001789 GO:0000160
Vimu5g00197 216 MobiDBLite consensus disorder prediction 181 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00197 Vimu-Chr5 1779063 1780756 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu5g00197 Response_reg 3.7e-19 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00197 5 1779063 1780756 Vimu4g02092 4 23245285 23248517 PCT