Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu5g00196 | ATGGTTTTCATTGGGAGTCATAAGCAATTTATTGATAGTGTGTGCACAATTGTGATCAAGGGTAACTGGGGCAATCTGTTGAAGGTGAAGAGTACCTCTGCTTTCAGTTCTTCTACCATTCACCAGGTACTGTTGCAGCTCTCACTCTATGATTATGGGCTCTCTCATTCCTTCCCATTCTTCAAATGGCTCGACTCCATCCCAAATTATAGCCATTCCTTGCAATGTTCATGGGTCATGATTCACATCCTCACTGAACATAAGCATTTCAAAACTGCACATCATATGCTTGAAAAAATTGCGAACAGGGATTTTCTTCCATCACCTTCAGTTTTGAGCACTTTGGTGAGGACTCATGACAACCCAGAAGTCAATTCTCAAGTTTTGAGCTGGCTTGTCATACATTATGCTAAGTCAAAGATGACACATGATGCAATACAAGTTTTTGAGCAGATGAGGTTACATAAAGTCAAACCTCATTTGCATGCTTGCACTGTTCTTTTGAATTCCTTGTTAAAGGACGGGGTTACTCACATGGTGTGGAAAATTTACAGGAGAATGGTTCAAGCTGGAGTTGTTCCCAATATGTACATTTACAATTGTTTATTCCATGCCTGTTCAAAAGCAAGAGATGTGGAAAGGGCAGAACAGTTATTAAATGAGTTGGATTTAAAGGGTATGCTTCCTGATATCTTCACATATAATACTTTGATATCATTATTCTGCAAGAAAGGTATGCACTATGAGGCTTTATCTATCCAGAGCAGAATGGAAAGAGAGGGGATAAACCTAGATATTGTTAGTTATAACTCTCTCATTTATGGATTTTGCAAAGAAGGCAGGATGAGAGAAGCTATGAGGATGTTTAGCGAAATAAAAAATGCAACTCCCAATCATGTGACATATACTACATTGATTGATGGTTACTGTAAAACAAATGAGCTGGAGGAATCTCTGAAAATTCTGGGACTGATGGAGTCTAAGGGATTGTACCCTGGAGTTGTAACTTATAATTCAGTTTTGCGCAAGCTCTGTCAAGATGGCAGGATAAAGGACGCTAACAAACTCTTGACTGAGATGAGTGAAAGGAAAGTTCAAGCTGACAATATCACTTGCAACACACTTATTAATGCATACTGCAAGGTTGGAGATATGAAATCTGCTTTGAAATTTAAGAACAAGATGTTAGAATCTGGATTAAAACCCGATCCATTTACATATAAGGCACTGATTCATGGATTCTCCAAGACAAATGAGGTGGAAACTGCAAAGGAGGTAATGTTCAGCATGCTTGATGCTGGATTTACACTCAGTTATTGTACATACACTTGGATTGTAGATTGCTACTGTAAGAAAGACAATATGGATGCAATTTTAGCACTGCCAAATGAGTTTCTGAGTAGAGGTCTTTGTCTAGATGTTTCAGTATACAGGGCATTGATAAGAAGGTTATGCAAGTTAGAAAGGGTTGAATGTGCTGAAAAGTTATTCAATCAAATGGAAGGAAAGGGTATATCAGGTGACAGTGTTATCTATACCAGTCTTGCATATGCTTATTGGAAAGCAGGCAATGCAAGTGCTTCCTTGGCTGTGTTAGAAGAGATGACAAAGAGAACGTTGATGATCACAGTCAAACTGTATAGATGCTTTAGTACTTCTGATGCTAGGGAGAATAAAGTGTCACTGATCTTCTGGAATCATGTGGTGGATAGGGGTTTGATGTCGAGAAATTCAATGAATAAAATACAGCAAATGCTGATATGA | 1764 | 0.3838 | MVFIGSHKQFIDSVCTIVIKGNWGNLLKVKSTSAFSSSTIHQVLLQLSLYDYGLSHSFPFFKWLDSIPNYSHSLQCSWVMIHILTEHKHFKTAHHMLEKIANRDFLPSPSVLSTLVRTHDNPEVNSQVLSWLVIHYAKSKMTHDAIQVFEQMRLHKVKPHLHACTVLLNSLLKDGVTHMVWKIYRRMVQAGVVPNMYIYNCLFHACSKARDVERAEQLLNELDLKGMLPDIFTYNTLISLFCKKGMHYEALSIQSRMEREGINLDIVSYNSLIYGFCKEGRMREAMRMFSEIKNATPNHVTYTTLIDGYCKTNELEESLKILGLMESKGLYPGVVTYNSVLRKLCQDGRIKDANKLLTEMSERKVQADNITCNTLINAYCKVGDMKSALKFKNKMLESGLKPDPFTYKALIHGFSKTNEVETAKEVMFSMLDAGFTLSYCTYTWIVDCYCKKDNMDAILALPNEFLSRGLCLDVSVYRALIRRLCKLERVECAEKLFNQMEGKGISGDSVIYTSLAYAYWKAGNASASLAVLEEMTKRTLMITVKLYRCFSTSDARENKVSLIFWNHVVDRGLMSRNSMNKIQQMLI | 587 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu5g00196 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 265 | 295 | IPR002885 | - | |
| Vimu5g00196 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 333 | 367 | IPR002885 | - | |
| Vimu5g00196 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 368 | 402 | IPR002885 | - | |
| Vimu5g00196 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 508 | 542 | IPR002885 | - | |
| Vimu5g00196 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 298 | 332 | IPR002885 | - | |
| Vimu5g00196 | 587 | NCBIfam | pentatricopeptide repeat | 232 | 265 | IPR002885 | - | |
| Vimu5g00196 | 587 | NCBIfam | pentatricopeptide repeat | 267 | 293 | IPR002885 | - | |
| Vimu5g00196 | 587 | NCBIfam | pentatricopeptide repeat | 476 | 508 | IPR002885 | - | |
| Vimu5g00196 | 587 | NCBIfam | pentatricopeptide repeat | 163 | 195 | IPR002885 | - | |
| Vimu5g00196 | 587 | NCBIfam | pentatricopeptide repeat | 370 | 403 | IPR002885 | - | |
| Vimu5g00196 | 587 | NCBIfam | pentatricopeptide repeat | 335 | 368 | IPR002885 | - | |
| Vimu5g00196 | 587 | NCBIfam | pentatricopeptide repeat | 300 | 333 | IPR002885 | - | |
| Vimu5g00196 | 587 | NCBIfam | pentatricopeptide repeat | 405 | 436 | IPR002885 | - | |
| Vimu5g00196 | 587 | NCBIfam | pentatricopeptide repeat | 197 | 231 | IPR002885 | - | |
| Vimu5g00196 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 125 | 159 | IPR002885 | - | |
| Vimu5g00196 | 587 | Gene3D | Tetratricopeptide repeat domain | 294 | 364 | IPR011990 | GO:0005515 | |
| Vimu5g00196 | 587 | Gene3D | Tetratricopeptide repeat domain | 365 | 430 | IPR011990 | GO:0005515 | |
| Vimu5g00196 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 160 | 194 | IPR002885 | - | |
| Vimu5g00196 | 587 | Gene3D | Tetratricopeptide repeat domain | 78 | 293 | IPR011990 | GO:0005515 | |
| Vimu5g00196 | 587 | Gene3D | Tetratricopeptide repeat domain | 431 | 583 | IPR011990 | GO:0005515 | |
| Vimu5g00196 | 587 | FunFam | Pentatricopeptide repeat-containing protein At5g39710 | 248 | 352 | - | - | |
| Vimu5g00196 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 403 | 437 | IPR002885 | - | |
| Vimu5g00196 | 587 | PANTHER | MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 | 256 | 547 | - | - | |
| Vimu5g00196 | 587 | Pfam | PPR repeat | 510 | 538 | IPR002885 | - | |
| Vimu5g00196 | 587 | Pfam | PPR repeat family | 368 | 416 | IPR002885 | - | |
| Vimu5g00196 | 587 | Pfam | PPR repeat family | 297 | 338 | IPR002885 | - | |
| Vimu5g00196 | 587 | Pfam | Pentacotripeptide-repeat region of PRORP | 134 | 284 | IPR033443 | - | |
| Vimu5g00196 | 587 | Pfam | PPR repeat | 468 | 501 | IPR002885 | - | |
| Vimu5g00196 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 230 | 264 | IPR002885 | - | |
| Vimu5g00196 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 195 | 229 | IPR002885 | - | |
| Vimu5g00196 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 473 | 507 | IPR002885 | - |