Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00194 ATGATTCAAGGGTTAACTGGAGTGGTTGAACGCCTGGCCTCTTCGGATAGGCCTCACAAGGACCAAGATTTTGTTGCTCGGGCTGGTCTTGAGGATGATAGGTTTGTTGATGGCGGTTCCTTTCAGTGTTCGACCAAATGGAGGAAGTTAGACATTCCAGTGTTTGGAGGGGATGAAGCATATGGGTGGACCAATAGAGTGTTGACTGGCATCCTACAAAATCCCTTTTGGTATCAGGCAGGTGGGAAAGACAATCTTGTGAAACTTTGGGATGCTAAGACAGGGAAAGAGCTTTGCTCATTTCATGGGCACAAAAATACTGTGCTATGTGTCAAATGGAATCAAAATGGCAACTGGGTGTTAACAGCTTCAAAGGATCAAATAATAAAGAGTACCAATATTCATATGTACCTTGATTTACAGCTTTATGACATTAGAGCCATGAAGGAGCTTGAATCATTCCGAGGACATCGCAAGGATGTTACTGCTTTGGCATGGCATCCATTCCATGAGGAGTACTTTGTGAGTGGGAGTTATGATGGTTCGATCTTCCATTGGCTTGTTGGTGGCAGCAGTGATCATACAACAAAATTTTGGTGCAGAAATAGGCCAGGAGACACCCTTCGTGATAGATTTAACCCTGGCATGCAAGGATATGCTGATCCAAATCCTGTTGCTGGTCGGGTGGGTGGTAATTTTCCAATGGCTGAAGGACCAACAACTCCAGGACCATTTGTCCCTGGGTTAAATCGAAATGAGGGCACCATTCCAGGTGTTGGAGTTGCTATGCCCTTATCTATTCCTTCTCTTGACATGCCTCAAGGGGAGCAGAAGCAGCCACATCCTGTTTCAATGGGTGCTCCACCTCTTCCCCCAGGTCCACATCCCTCCCTTCTTAATGCCAATCAACAGCAACCATACCAACAAAATCCTCAGCAGATGCCGCCACAACATCAACACCAAGGTCTACCACAGCAGATGGGTCCTTTACCAATGCCTCCAAACATGCCACAATTACAGCATCCTTCACATTCACCCATGGTCCCTCACCAGCATTTACCTCGCCCTCCTCCCCAAATGCCTATTGGCCTGCCAGGATCTATACCAGGGATTTCATCAGTGCCTACATCACATCCGATGCCAATGCCTGGCCCTATGATTGTTGAGTGTTGTATTACTGGTGGCTGTATTGGGCTAGATATTGATGTTTTTGTTGATATTTCATAG 1227 0.4629 MIQGLTGVVERLASSDRPHKDQDFVARAGLEDDRFVDGGSFQCSTKWRKLDIPVFGGDEAYGWTNRVLTGILQNPFWYQAGGKDNLVKLWDAKTGKELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKSTNIHMYLDLQLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSYDGSIFHWLVGGSSDHTTKFWCRNRPGDTLRDRFNPGMQGYADPNPVAGRVGGNFPMAEGPTTPGPFVPGLNRNEGTIPGVGVAMPLSIPSLDMPQGEQKQPHPVSMGAPPLPPGPHPSLLNANQQQPYQQNPQQMPPQHQHQGLPQQMGPLPMPPNMPQLQHPSHSPMVPHQHLPRPPPQMPIGLPGSIPGISSVPTSHPMPMPGPMIVECCITGGCIGLDIDVFVDIS 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00194 408 PANTHER WD40 REPEAT PROTEIN 188 376 IPR045245 GO:0031124
Vimu5g00194 408 MobiDBLite consensus disorder prediction 265 352 - -
Vimu5g00194 408 Gene3D - 77 219 IPR015943 GO:0005515
Vimu5g00194 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 130 IPR001680 GO:0005515
Vimu5g00194 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 154 186 - -
Vimu5g00194 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 80 100 IPR001680 GO:0005515
Vimu5g00194 408 SUPERFAMILY WD40 repeat-like 78 199 IPR036322 GO:0005515
Vimu5g00194 408 MobiDBLite consensus disorder prediction 297 324 - -
Vimu5g00194 408 Pfam WD domain, G-beta repeat 95 130 IPR001680 GO:0005515
Vimu5g00194 408 Pfam WD domain, G-beta repeat 150 186 IPR001680 GO:0005515
Vimu5g00194 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 154 186 IPR001680 GO:0005515
Vimu5g00194 408 SMART WD40_4 94 133 IPR001680 GO:0005515
Vimu5g00194 408 SMART WD40_4 147 187 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00194 Vimu-Chr5 1754752 1760649 Transposed