Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00190 ATGTCTATGCAGGATGAAAATTCCGATACAAAAGAAGTAATATGTCCCCAGAGAAGGCTAACAAATCTGATGCATCATGGTGGGAACAAGTTCTGCGCTGATTGCGGAACTCCAGAGCCAAAATGGGTTCTATCATTGAAGCTAGATGAATGGACGGATGAACAAGTTGATGCATTAGCAAAATTAGGAGGAAATACACTATTAAACAAGAAGTATGAAGCTTGCCTCCCAAGTAACATGAGAAAACCAAAACCACATTCTTCCATTGAAGAGCGCTCTGAATATATTCGGAGAAAATATGAGTTCCAACAGTTTATGGGGTGTGATGACAATGTGGCAGGCCCCATTATCCCATCTCAGGGAAGAAGTGTATCACTTGCTCAGTGCAGCTCTTCATACTATCATGCTCTTATGGACAAAAAACCATCTGAAAGATTTCCAGGCAAAACTCGAATTGGGAATGCATTCCGAAATAGTTGGGGAAGAAAAGATTCTGAGCACAAGTCAAAGAAAAGTACCTCATTGGCAGGTATGGTTGAATTTGTTGGGTTGATTAAGGTTAATGTTGTTAGAGGCACTCACCTAGCTGTTCGAGACGTAATGACTAGTGACCCTTATGTCATCCTTTCTTTGGGACACCAATCAGTAAAAACACGAGTCATAAAGAACAATTTAAATCCAGTGTGGAATGAAAGTCTAATGCTTTCAATTCCAGAGAACATTCCTCCTCTAAAAGTGCTTGTGTATGACAAGGATACATTTTCAACTGATGATTTTATGGGAGAGGCTGAAATAGACATTCAACCTCTAGTTATAGCTGCAAAGGCCTATGAGAAATCAAACATCAACGAATCCATGCAACTTGGTAAATTTGTGGCAAGCAAGGACAACACCCTTGTTAGAGATGGCATCATATCCCTTGATGAAGGCAAGATCAAACAGGAGATCTCAGTGAGACTGCAGAACATTGAGAGAGGTGAACTTGAGCTTGAGCTTGAGTGTGTTCCTCTTACTCAATAG 1020 0.4049 MSMQDENSDTKEVICPQRRLTNLMHHGGNKFCADCGTPEPKWVLSLKLDEWTDEQVDALAKLGGNTLLNKKYEACLPSNMRKPKPHSSIEERSEYIRRKYEFQQFMGCDDNVAGPIIPSQGRSVSLAQCSSSYYHALMDKKPSERFPGKTRIGNAFRNSWGRKDSEHKSKKSTSLAGMVEFVGLIKVNVVRGTHLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVIAAKAYEKSNINESMQLGKFVASKDNTLVRDGIISLDEGKIKQEISVRLQNIERGELELELECVPLTQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00190 339 CDD C2_ArfGAP 182 326 - -
Vimu5g00190 339 SMART C2_3c 184 279 IPR000008 -
Vimu5g00190 339 Pfam Putative GTPase activating protein for Arf 44 106 IPR001164 GO:0005096
Vimu5g00190 339 SUPERFAMILY ArfGap/RecO-like zinc finger 17 106 IPR037278 -
Vimu5g00190 339 Gene3D Arf GTPase activating protein 3 43 IPR038508 -
Vimu5g00190 339 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 180 274 IPR035892 -
Vimu5g00190 339 SMART arf_gap_3 17 113 IPR001164 GO:0005096
Vimu5g00190 339 Pfam C2 domain 184 270 IPR000008 -
Vimu5g00190 339 ProSiteProfiles C2 domain profile. 165 281 IPR000008 -
Vimu5g00190 339 Gene3D Arf GTPase activating protein 44 112 IPR038508 -
Vimu5g00190 339 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 43 339 IPR044518 GO:0005096|GO:0005543
Vimu5g00190 339 Gene3D C2 domain 182 339 IPR035892 -
Vimu5g00190 339 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 181 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00190 Vimu-Chr5 1714128 1719892 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02037 4 22679423 22685392 Vimu5g00190 5 1714128 1719892 PCT