Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00189 ATGGAGTCTCTAATTCTTCAACTCCATGAAATATCAGCTGTGAAATTTGGTAATTTCAAGCTGAAATCTGGCATATCCTCACCAATCTACATAGACCTCCGCCTTGTTATATCTTACCCTTCTGTCCTCCGGAATGTTTCTCAAACCCTCATTTCTTCTGTCTCTTCCACTTCATTTGACCTTGTCTGTGGTGTTCCTTACACTGCTCTTCCCTTTGCCACCTGTGTCTCCGTTACTCAGAACATCCCCATGGTCATGCGCCGCAAGGAAATAAAAGATTATGGCACTTCTAAAGCCATTGAAGGTGATTTCAAGCAAGGTCAAAGTTGCTTGATAATTGAGGATCTAGTTACAAGTGGCACATCAATTTTGGAAACTGCTGCTCCACTGCGTGCTGCAGGGTTGAAGGTCAGTGATGCTGTTGTTTTGATTGATAGAGAGCAAGGTGGGAAAGAGAATCTTGAGAATAACGGAATCAAGCTGCATGCAATTCTTAAGTTGACTGAAATGGTGAAAATTTTGCGTGAAAAAGGAAAGCTTAATAAGCAGATGCTAGAGGTTGTTATGAGATTCTTAGAAGAGAATCAGAAGATTGTTGCTTTGGCAACAAGAACTAAGTTCAATGCCTTTCCATTATTGGAAAGGGCTAAATTGTCCAAGAATCCGACAGGAAAGAGGTTGTTTGAGATAATGGCTGAGAAGGAGAGTAATTTGTGTTTGGCTGCAGATGTTGCAACTGCTGCTGAATTACTTGAAATCGCTGACAAGGTTGGACCTGAGATATGCTTGCTGAAGACACATGTGGATATTTTACCAGATTTTACTCCTGATTTTGGTTCTAAGCTTCGCTCGATTGCAGAAAAACATAACTTCTTAATATTTGAGGATCGTAAGTTTGCTGATATTGGTAACACAGTGACCATGCAGTATGAAGGAGGGATCTTCCATATATTGGATTGGGCTGACATAGTAAATGCTCACATTATATCTGGTCCTGGAATTGTAGAAGGACTGAAGTTGAAGGGTTTGCCTCGTGGAAGGGGTCTTTTGCTGCTTGCTGAAATGAGTTCAAGTGGTAACCTTGCCAAGGGAGATTACATCACTGCTGCAGTGAAAATTGCTGAGGATCATTCTGACTTTGTCATTGGCTTCATCTCAGTCAACCCAGCATCATGGCCTGGAGCACCTGTAAATCCCTCTTTCATTCATGCAACGCCTGGAGTTCAAATGGTGACTGGTGGTGATGCTTTAGGGCAGCAATATAACACGCCATATTCTGTTATCTATGAAAGGGGTAGTGACATTATCATAGTGGGTCGTGGCATCATCAAGGCCAAAAATCCGAGTCATGCAGCTCGTGAATATCGTCTTCAAGGATGGAATGCATATTTGGCCAAGTGCAGCTGA 1407 0.4222 MESLILQLHEISAVKFGNFKLKSGISSPIYIDLRLVISYPSVLRNVSQTLISSVSSTSFDLVCGVPYTALPFATCVSVTQNIPMVMRRKEIKDYGTSKAIEGDFKQGQSCLIIEDLVTSGTSILETAAPLRAAGLKVSDAVVLIDREQGGKENLENNGIKLHAILKLTEMVKILREKGKLNKQMLEVVMRFLEENQKIVALATRTKFNAFPLLERAKLSKNPTGKRLFEIMAEKESNLCLAADVATAAELLEIADKVGPEICLLKTHVDILPDFTPDFGSKLRSIAEKHNFLIFEDRKFADIGNTVTMQYEGGIFHILDWADIVNAHIISGPGIVEGLKLKGLPRGRGLLLLAEMSSSGNLAKGDYITAAVKIAEDHSDFVIGFISVNPASWPGAPVNPSFIHATPGVQMVTGGDALGQQYNTPYSVIYERGSDIIIVGRGIIKAKNPSHAAREYRLQGWNAYLAKCS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00189 468 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 224 IPR023031 GO:0004588|GO:0006221
Vimu5g00189 468 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 293 306 IPR018089 GO:0004590|GO:0006207
Vimu5g00189 468 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 236 455 IPR001754 GO:0004590|GO:0006207
Vimu5g00189 468 NCBIfam orotidine-5'-phosphate decarboxylase 238 456 IPR014732 GO:0004590|GO:0044205
Vimu5g00189 468 NCBIfam orotate phosphoribosyltransferase 8 169 IPR004467 GO:0004588
Vimu5g00189 468 SUPERFAMILY PRTase-like 3 190 IPR029057 -
Vimu5g00189 468 CDD PRTases_typeI 59 166 IPR000836 -
Vimu5g00189 468 Gene3D - 1 204 IPR029057 -
Vimu5g00189 468 FunFam Uridine monophosphate synthetase 1 201 - -
Vimu5g00189 468 CDD OMP_decarboxylase_like 238 455 - -
Vimu5g00189 468 Gene3D Aldolase class I 209 468 IPR013785 -
Vimu5g00189 468 SMART OMPdecase_2 237 455 IPR001754 GO:0004590|GO:0006207
Vimu5g00189 468 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 1 467 - -
Vimu5g00189 468 FunFam Uridine monophosphate synthetase 207 468 - -
Vimu5g00189 468 Pfam Phosphoribosyl transferase domain 55 153 IPR000836 -
Vimu5g00189 468 SUPERFAMILY Ribulose-phoshate binding barrel 211 464 IPR011060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00189 Vimu-Chr5 1709278 1711888 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02036 4 22662876 22665218 Vimu5g00189 5 1709278 1711888 PCT