Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00188 ATGCCAGGGAGGTGGGCACTTTTTACAGGGTACGCAGGTGTTGTATCTGAGATTGACTTTTATAGGATGTCTCAATGGCAGCTGGTGATTGCTTTTGCTAGCATGGCATCAAGTAATTTATTCTTTGATGATATACGGAGCAAAGTTGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTAGTAAATGATCCTGGACAAACTGCACTTAAACCTAATGGTACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCTTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACAATATGCTCTGGTTGCAAACCCAGGGTCCATAACCGATGCCCTACTTGTAGGCATGAGCTTGGCAATATCAGATGTCTGGCACTGGAGAAAGTGGCTGCATCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATTGGTATATATCCATATTACAGCAAGCTAAAGCATGAATCACAATGTGCATATAGACCTTACAACTGTCCATATGCTGGTTCAGAATGCTCTATTATGGGTGATATACCCTACCTGGTGGCTCATCTGAAAGATGACCACAAAGTGGACATGCACAATGGTAGCACTTTCAACCATCGCTATGTCAAATCAAATCCACATGAAGTTGAAAATGCCACATGGATGTTGACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAGCTTGGAATGGCTCCTGTCTACATAGCCTTCTTGCGGTTCATGGGTGATGATAATGAAGCAAAGAATTATAGTTATAGTTTAGAGGTAGGTGGAAATGGTAGGAAGATGATTTGGCAGGGTGTGCCAAGAAGCATCAGGGACAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATTATTCAGAGAAATATGGCCCTTTTCTTTTCTGGCGGTGACAGGAAGGAATTGAAGCTAAGGGTTACTGGTAGGATTTGGAAAGAACAATGA 1017 0.4258 MPGRWALFTGYAGVVSEIDFYRMSQWQLVIAFASMASSNLFFDDIRSKVDVDPPQNEESTDVGELVNDPGQTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAYRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00188 338 FunFam E3 ubiquitin-protein ligase SINAT5-like 48 141 - -
Vimu5g00188 338 CDD RING-HC_SIAHs 88 126 - -
Vimu5g00188 338 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 199 331 IPR008974 GO:0005515
Vimu5g00188 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 198 IPR013083 -
Vimu5g00188 338 ProSiteProfiles Zinc finger RING-type profile. 90 126 IPR001841 -
Vimu5g00188 338 FunFam E3 ubiquitin-protein ligase SINAT3 142 198 - -
Vimu5g00188 338 CDD Sina 204 332 - -
Vimu5g00188 338 Pfam Seven in absentia protein family 132 331 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vimu5g00188 338 SUPERFAMILY TRAF domain-like 143 335 - -
Vimu5g00188 338 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 71 337 - -
Vimu5g00188 338 SUPERFAMILY RING/U-box 82 130 - -
Vimu5g00188 338 ProSiteProfiles Zinc finger SIAH-type profile. 143 203 IPR013010 GO:0008270
Vimu5g00188 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 141 IPR013083 -
Vimu5g00188 338 FunFam E3 ubiquitin-protein ligase SINAT5-like 199 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00188 Vimu-Chr5 1704666 1708249 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00188 5 1704666 1708249 Vimu5g00188 5 1704666 1708249 ECH
Vimu4g02034 4 22644790 22647246 Vimu5g00188 5 1704666 1708249 PCT