Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00180 ATGACACAAATCTCACATTCCTCTCATACTCTTTTTTTACTGTGTCTTTATTTCTTCTCTTTCATAGAGGCTTGCAATGGTGGTTTCACTGTGGAGATCATCCACCGTGACTCACCAAAATCACCGTTCTATCGTCCCACAGAAACTCAACTCCAACGAGTTGCCAAAGCTGTTCATCGCTCCATTCGTCGTGCTAACCATTTCAACCATACTTTTGTCTCGAAAAACACTGCTGAGTCCGATGTGACACCAGATATAGGTGACTACGTGATGAGCTATTCAGTTGGAACCCCAGAATTCCAAGTTTTTGGCATTGTTGACACAGGCAGTGATATTGTTTGGATGCAGTGTCAACCTTGTAAAACATGTTACGACCAAACCACTCCAATCTTCAATCCTTCAAAATCCACCACCTACGAAACCCTTCCTTGTTCTTCTACTTCATGTAAATCAGTGTCAGATAACTCTTGCTATTCACACAAAAAGAAAAACTGTGAATACAGTATTTTCTATGAGGATGGCAGATACTCACAAGGAGATCTTGGTTTGGAGACACTCACTTTAGGTTCCACCATTGGCTCTTCTGTCAAATTTCCTAGAACTGTGATAGGATGTGGACGTAACAACAGCTTTTCCTCTGAAGAGAAAAGTTCTGGCATAGTTGGTTTAGGTCAAGGATCTTTGTCTCTCATATCTCAGTTGAGTTCTTCAGTAGGTGGAAAGTTTTCTTATTGTCTTGCACCAATAGATAACATAGCTAGCAAACTCAGTTTTGGAGATGCTGCTGTGGTTTCAGGGAATGGCACTGTTTCCACCCCAATGACCTATCATGGTCATTACTACCTGACCCTGGAAGCACTCAGTGTTGGCAAAAACAGAATAAAGTTTGGAAAATCTAATGGAGAGGGAAATATCATAATTGACTCAGGTACAACACTCACTCTTTTGCCAGATGATGTTTACTCAAAGCTGGAATCAGCAGTGGCGCATGAAGTTAAGTTAAAACGTGTTAAGGATCCATGGAAACAGCTGAGCCTTTGCTATAAAGGTGCATTTCATGAACTGCATGCACCAGTGATAACATTGCATTTCAGTGGCGATGCAGATGTTAAGTTAACTGTTGACAACTCCTTCATTGACTCGGGTGATGAGGTAGTTTGCTTTGCTTTCATGGCTAGTAAAACCTTTTCCATCTTTGGAAACTTTGCTCAGAAAAACATGTTGGTTGGCTATGATCTGCAGAAGAAAACAGTCTCCTTTAAGCCCACAGATTGTGTTCGACAGTGA 1287 0.4126 MTQISHSSHTLFLLCLYFFSFIEACNGGFTVEIIHRDSPKSPFYRPTETQLQRVAKAVHRSIRRANHFNHTFVSKNTAESDVTPDIGDYVMSYSVGTPEFQVFGIVDTGSDIVWMQCQPCKTCYDQTTPIFNPSKSTTYETLPCSSTSCKSVSDNSCYSHKKKNCEYSIFYEDGRYSQGDLGLETLTLGSTIGSSVKFPRTVIGCGRNNSFSSEEKSSGIVGLGQGSLSLISQLSSSVGGKFSYCLAPIDNIASKLSFGDAAVVSGNGTVSTPMTYHGHYYLTLEALSVGKNRIKFGKSNGEGNIIIDSGTTLTLLPDDVYSKLESAVAHEVKLKRVKDPWKQLSLCYKGAFHELHAPVITLHFSGDADVKLTVDNSFIDSGDEVVCFAFMASKTFSIFGNFAQKNMLVGYDLQKKTVSFKPTDCVRQ 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00180 428 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 305 316 IPR001969 GO:0004190|GO:0006508
Vimu5g00180 428 PANTHER OS07G0603500 PROTEIN-RELATED 31 425 - -
Vimu5g00180 428 FunFam Aspartic proteinase CDR1 261 428 - -
Vimu5g00180 428 Pfam Xylanase inhibitor C-terminal 279 421 IPR032799 -
Vimu5g00180 428 Pfam Xylanase inhibitor N-terminal 89 260 IPR032861 -
Vimu5g00180 428 ProSiteProfiles Peptidase family A1 domain profile. 89 421 IPR033121 -
Vimu5g00180 428 SUPERFAMILY Acid proteases 86 426 IPR021109 -
Vimu5g00180 428 FunFam Probable aspartic protease At2g35615 68 259 - -
Vimu5g00180 428 CDD pepsin_A_like_plant 89 425 IPR034161 -
Vimu5g00180 428 Gene3D Acid Proteases 259 428 IPR021109 -
Vimu5g00180 428 Gene3D Acid Proteases 66 258 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00180 Vimu-Chr5 1459903 1461189 Dispersed/Proximal