Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00175 ATGTGTGATTTGGAGATCTTGATTGAGCAATCGGTGTTGCGTTTAGTGAAGATTCAGAGGCCTATTAAGTCGCCTAGACCCTACCGAGCAGGAAAGATTGAGGAACAACTGTTGGTTAGAGGCTATGGCCGTTCCATTATCCGTGCGAACCATTTCAACAAATCTTATGAGTCTGCAAACACACCCCATGCAACTGTAACCTCAACCGTAGGAGAATACCTAATGAGTTATTCAATCGGAACCCCTCCAACACAAGTCTATGGAATTCTTGACACTGGTAGTGACATTACATGGCTGCAATGCCAACCATGTAAAAGATGTTACAAGCAAATCACTCCTATTTTTGATCCTTCAAAATCCAAAACCTACAAAACTGTTAGTTGTACTACTGCCACATGTCGTTCTGTACAAGGTACCTCTTGCCCTTCAGCCAATAGCAGTTGCAAATATTCTATAAGTTATGCTGATTGGTCATACTCACAAGGAGATCTTAGTTTAGACACCCTTACTTTACTCTCCATCAATGGCTATCTTGTAAAAATTCCTGGGATTGTCATAGGTTGTGGTCAGAACAATGATATTTTCTTTGAACATGGAAATTCTGGCATAGTTCGCCTAAGTCGTGCACCTTTGTCCCTTGTAAATCAATTGGGTCCATCAGTAGGTGGAAAGTTTTCTTATTGTTTGGTACCAGCATTTTCAAAACCTAGTGTATCTAGCAAACTCAATTTTGGAAATGCTGTTGTGGTTTCTGGCCATGGAACTGTCACAACCCCGTTATTTTCAAGAGGAGTGTTTTACTACCTAAACTTAGAAGGGTTAAGTGTGGGAAGCACGAGAATAGGGTTTGGAAGCTCTCTACATGGACGTGGTGAAAAGGGAAACATTATAATTGACTCAGGCACACCACTCACTCATCTGTCAAATGATGTTTACTCCAAGTTGGAATCGGCTGTTGCAGATGCAGTTAAATTGCAGCGTGCTAAGGATCCAAATGATGTGTTGAGCCTTTGTTACAAAGCTACATTTGAGAATATAAATGCACCAGTGATCACAGCACATTTTAGTGGTGCAAATGTGAGTTTGTATGGTCTCAACACCTTCATTAAAGTGGCTGATAGTGTTATGTGCTTTGCTTTCGTGGCTGGTGAAACTGTTATCTTTGGGAACTGGGCTCAGCAAAACGTTTTGGCAGACTTTGACAACAAAGAAAGAGAGATAATGAAATCGCAACTTCTGGAAGAAGGTAGAAAGAGCTTCGAAGCTCTCGAGCGGTGCTCTGGCGGTGCTCTTCTGAGAGATAGAAGAAAAGCTTAA 1317 0.4146 MCDLEILIEQSVLRLVKIQRPIKSPRPYRAGKIEEQLLVRGYGRSIIRANHFNKSYESANTPHATVTSTVGEYLMSYSIGTPPTQVYGILDTGSDITWLQCQPCKRCYKQITPIFDPSKSKTYKTVSCTTATCRSVQGTSCPSANSSCKYSISYADWSYSQGDLSLDTLTLLSINGYLVKIPGIVIGCGQNNDIFFEHGNSGIVRLSRAPLSLVNQLGPSVGGKFSYCLVPAFSKPSVSSKLNFGNAVVVSGHGTVTTPLFSRGVFYYLNLEGLSVGSTRIGFGSSLHGRGEKGNIIIDSGTPLTHLSNDVYSKLESAVADAVKLQRAKDPNDVLSLCYKATFENINAPVITAHFSGANVSLYGLNTFIKVADSVMCFAFVAGETVIFGNWAQQNVLADFDNKEREIMKSQLLEEGRKSFEALERCSGGALLRDRRKA 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00175 438 Gene3D Acid Proteases 49 243 IPR021109 -
Vimu5g00175 438 Pfam Xylanase inhibitor N-terminal 73 246 IPR032861 -
Vimu5g00175 438 ProSiteProfiles Peptidase family A1 domain profile. 73 410 IPR033121 -
Vimu5g00175 438 CDD pepsin_A_like_plant 72 407 IPR034161 -
Vimu5g00175 438 SUPERFAMILY Acid proteases 69 405 IPR021109 -
Vimu5g00175 438 PANTHER OS07G0603500 PROTEIN-RELATED 27 407 - -
Vimu5g00175 438 FunFam Probable aspartic protease At2g35615 52 245 - -
Vimu5g00175 438 Pfam Xylanase inhibitor C-terminal 267 407 IPR032799 -
Vimu5g00175 438 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 88 99 IPR001969 GO:0004190|GO:0006508
Vimu5g00175 438 Gene3D Acid Proteases 244 422 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00175 Vimu-Chr5 1445732 1448519 Tandem