Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00174 ATGTCACGTTCCTCAACCCTAGTTCTTATTATTCTGCTGTCTGTTCACAGCATCTCTTCCTTAGAGGCTCACAAAGGAGGGTTCAGTGTGGAAATCATCCACCGTGACTCATCAAAATCACCGTTGCATCGTCCCACAGAAACTCAATTCCAACGAGTTGCTAATGCTGTGGGTCGTTCCATTAATCGTGCCAATCATTTCAACCAAAACAAACCTAGGGCCAATATAACCCAAGATGATGGTGAATACCTTTTGAGCTATTCAGTTGGAACCCCACCATTTCAAGTTTATGGTATTGCTGATACAGGAAGTGACATAAATTGGTTGCAGTGTAAACCTTGTAAACCCTGTTACAACCAAACCAGTCCAATGTTTGACCCTTCAAAATCCAGCACATACAGAACCCTTTCTTACTCTTCTAGAATATGTAAATCAGTGCAAGGTACCACTAGAGATGGAGACAATTGTGAATATACCATTTCCTATGGTGATGGGTCAATGTCACAAGGAGATCTTAGTGAGGAGATCCTCACTTTAGACTCCACCAATGGCTCTTCAATCCAATTTCCAGGAACTGTCATAGGATGTGGACGAAGGAACACTGTGTCCTATGAAGGGAAGAGCTCTGGTGTACTTGGCCTTGGAAGAGGACCTGTGTCCTTGATATCTCAATTGGGTTCTTCAATTGGTGGAAAATTTTCCTATTGTTTGGCACCAACGTCTAATACTTCTAGCAGACTCAACTTTGGAGATGCTGCTGTGGTTTCTGGGAAAGGGACTGTATCAACTCCAATAATCTCACGTGGACCAGTATTTTACTACCTAACATTGGAAGCATTCAGTGTTGGAAACAAGAGAATAAAGTTAGGAAGCTCCTCGTCTGAATCTGATGGAGAGGGAAATATCATAATTGACTCAGGTACAACACTCACTTTTTTGCGAGATGATGATTACTCAAAGCTGGAATCAGCAGTGGCACATGAAGTTAAGTTAAAACGTGTTAAGGGTCCATATAAGCAGTTGAGCCTTTGCTTTGAAAGCAGTTTTCATGATCTGAAAGCACCAGTGATCACGGCACATTTTAGAGGTGCAGATGTGAAGTTAAATGCTGTCAACACATTTGTTGAAGTGGAAGAAAGGGTAGTGTGCTTAGCTTTCACGTCAAATAACTTTGTCATCTTTGGGAACTTGGCTCAGATGAACCTTTTGGTTGGCTATGACCTAGAAAAGAAAAGAGTCTCCTTCAAACCCACAGACTGTACTAACCAGTGA 1272 0.419 MSRSSTLVLIILLSVHSISSLEAHKGGFSVEIIHRDSSKSPLHRPTETQFQRVANAVGRSINRANHFNQNKPRANITQDDGEYLLSYSVGTPPFQVYGIADTGSDINWLQCKPCKPCYNQTSPMFDPSKSSTYRTLSYSSRICKSVQGTTRDGDNCEYTISYGDGSMSQGDLSEEILTLDSTNGSSIQFPGTVIGCGRRNTVSYEGKSSGVLGLGRGPVSLISQLGSSIGGKFSYCLAPTSNTSSRLNFGDAAVVSGKGTVSTPIISRGPVFYYLTLEAFSVGNKRIKLGSSSSESDGEGNIIIDSGTTLTFLRDDDYSKLESAVAHEVKLKRVKGPYKQLSLCFESSFHDLKAPVITAHFRGADVKLNAVNTFVEVEERVVCLAFTSNNFVIFGNLAQMNLLVGYDLEKKRVSFKPTDCTNQ 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00174 423 ProSiteProfiles Peptidase family A1 domain profile. 83 416 IPR033121 -
Vimu5g00174 423 FunFam Aspartic proteinase CDR1 252 423 - -
Vimu5g00174 423 Pfam Xylanase inhibitor C-terminal 273 416 IPR032799 -
Vimu5g00174 423 Pfam Xylanase inhibitor N-terminal 83 251 IPR032861 -
Vimu5g00174 423 Gene3D Acid Proteases 62 249 IPR021109 -
Vimu5g00174 423 SUPERFAMILY Acid proteases 78 420 IPR021109 -
Vimu5g00174 423 PANTHER OS07G0603500 PROTEIN-RELATED 30 421 - -
Vimu5g00174 423 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 302 313 IPR001969 GO:0004190|GO:0006508
Vimu5g00174 423 Gene3D Acid Proteases 250 423 IPR021109 -
Vimu5g00174 423 CDD pepsin_A_like_plant 82 420 IPR034161 -
Vimu5g00174 423 FunFam Probable aspartic protease At2g35615 62 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00174 Vimu-Chr5 1440399 1441670 Tandem