Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00173 ATGAAGACTTTGTTGACAACAATGTCACTTTCCTCAACCCTAGTTCTTATTCTGCTGTCTCTTCAGAGCATCTCTTCCTTAGAGGCTCATAAAGGAGGGTTCAGTGTGGAAATCATCCACCGTGACTCTTCAAAATCACCGTTGCATCGTCCCACAGAAACTCAATTCCAACGAGTTGCTAATGCAGTGGATCGTTCCATTAATCGTGCCAACCGTTTCAACCAAAACACACCTAGGACCAATATAACCCAAGATGATGGTGGATACCTTTTGAGCTATTCAGTTGGAACCCCACCATTTCAAATTTATGGTATTGCTGATACAGGAAGTCCCATAATTTGGTTGCAGTGTAAACCTTGTAAACCCTGTTACAACCAAACCAGTCCAATATTTGAGCCTTCAAAATCCAGCACATACAGAACCCTTTCTTACTCTTCTAGAATATGTAAATTAGTTGAAGGTACCACTAAAGATGGAGACAATTGTGAATATCACGCTGCCTATGGTGATGGGTCAGAGTCACATGGAGATCTTAGTGAGGAGATCCTCACTTTAGACTCCACCAATGGCTCTTCAATCCAATTTCCAAGAACTGTCATAGGATGTGGACGAAGGAACACTGGGTCCTATGATAGGAACAGCTCTGGTATAGTTGGCCTTGGAAGAGGACCTGTGTCCTTGATATCTCAATTGGGCTCTTCAATTGGTGGAAAATTTTCCTATTGTTTCGCACCAACGTCTAATACTTCTAGCAGACTCAATTTTGGAGATGCTGCTGTGGTTTCTGGGAAAGGGACTGTATCAACTCCAATAATCTCACGTGGACCAGTATTTTACTACCTAACATTGGAAGCATTCAGTGTTGGAAACAAGAGAATAAAGTTAGGAAGCTCCTCGTCTGAATCTGATGGAGAGGGAAATATCATAATTGACTCAGGTACAACACTCACTTTTTTGCGAGATGATGATTACTCAAAGCTGGAATCAGCAGTGGCACATGAAGTTAAGTTAAAACGTGTTAAGGGTCCATATAAGCAGTTGAGCCTTTGCTTTGAAAGCAGTTTTCATGATCTGAAAGCACCAGTGATCACGGCACATTTTAGAGGCGCAGATGTGAAGTTAAATGCTGTCAACACATTTCTTGAAGTCGCCGAAAGGGTAGTGTGCTTCGCTTTCTCCTCAAGTAACGGTGCCATCTTTGGGAACATGGCTCAGATGAACCTTCTGGTTGGCTATGACCTAGAAAAGAAAAGAGTCTCCTTCAAACCCACAGACTGTACTAACCAGTGA 1290 0.424 MKTLLTTMSLSSTLVLILLSLQSISSLEAHKGGFSVEIIHRDSSKSPLHRPTETQFQRVANAVDRSINRANRFNQNTPRTNITQDDGGYLLSYSVGTPPFQIYGIADTGSPIIWLQCKPCKPCYNQTSPIFEPSKSSTYRTLSYSSRICKLVEGTTKDGDNCEYHAAYGDGSESHGDLSEEILTLDSTNGSSIQFPRTVIGCGRRNTGSYDRNSSGIVGLGRGPVSLISQLGSSIGGKFSYCFAPTSNTSSRLNFGDAAVVSGKGTVSTPIISRGPVFYYLTLEAFSVGNKRIKLGSSSSESDGEGNIIIDSGTTLTFLRDDDYSKLESAVAHEVKLKRVKGPYKQLSLCFESSFHDLKAPVITAHFRGADVKLNAVNTFLEVAERVVCFAFSSSNGAIFGNMAQMNLLVGYDLEKKRVSFKPTDCTNQ 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00173 429 Gene3D Acid Proteases 256 429 IPR021109 -
Vimu5g00173 429 ProSiteProfiles Peptidase family A1 domain profile. 89 422 IPR033121 -
Vimu5g00173 429 FunFam Probable aspartic protease At2g35615 68 256 - -
Vimu5g00173 429 FunFam Aspartic proteinase CDR1 258 429 - -
Vimu5g00173 429 SUPERFAMILY Acid proteases 84 426 IPR021109 -
Vimu5g00173 429 Pfam Xylanase inhibitor C-terminal 279 422 IPR032799 -
Vimu5g00173 429 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 308 319 IPR001969 GO:0004190|GO:0006508
Vimu5g00173 429 PANTHER OS07G0603500 PROTEIN-RELATED 36 427 - -
Vimu5g00173 429 Gene3D Acid Proteases 66 255 IPR021109 -
Vimu5g00173 429 Pfam Xylanase inhibitor N-terminal 89 257 IPR032861 -
Vimu5g00173 429 CDD pepsin_A_like_plant 88 426 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00173 Vimu-Chr5 1421417 1422706 Dispersed/Tandem