Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00171 ATGTCACTTTTCTCAACCCTGGTTCTTATTCTGCTGTCGCTTCACAGCTCCTCTTCCTTAGAGGCTCACAAAGGAGGGTTCAGTGTGGAAATCATCCACCGTGACTCACCAAAATCACCGTTGCATCGTCCCACAGAAACTCAATTCCAACAAGTTGCTAATGCAGTGCGTCGTTCCATTAATCGTGCCAATCATTTCAACCAAAACACACCTAGCACCAATATAACCCTAGATGATGGTGAATACCTTTTGAGCTATTCAGTTGGAACCCCACCATTTCAAATTTATGGTGTTGCTGATACAGGAAGTGACATAACTTGGTTGCAGTGTAAACCTTGTAAACCCTGTTACAACCAAACCAGTCCAATATTTGAGCCTTCAAAATCCAGCACATACAGAACCCTTTCTTACTCTTCTAGAATATGTAAATTAGTTGAAGGTACCACTAAAGATGGAGACAATTGTGAATATACCGCTGCCTATGGTGGTGGGTCAGAGTCACAAGGAGATCTTAGTGAGGAGACCCTCACTTTAGACTCCACCAATGGCTCTTCAATCCAATTTCCAGGAACTGTCATAGGATGTGGACGAAGGAACACTGGGTCCTATGATAGGAACAGCTCTGGTATAGTTGGCCTTGGAAGAGGACCTGTGTCCTTGATATCTCAATTGGGTTCTTCAATTGGTGGAAAATTTTCCTATTGTTTGGCACCAATGTCTAATACTTCTAGCAGACTCAATTTTGGAGATGCTGCTGTGGTTTCTGGGAAAGGGACTGTATCAACTCCAATATTCTCACGTGGACCAGTATTTTACTACCTAAAATTGGAAGCATTCAGTGTTGGAAACAAGAGAATAAAGTTAGGAAGCTCCTCGTCTGAATCTGATGGAGAGGGGAATATCATAATTGACTCAGGTACAACACTCACTTATTTGCGAGATGATGATTACTCAAAGCTGGAATCAGCAGTGGCACATGAAGTTAAGTTAAAACGGGTTAAGAGTCCAAATAAGCAGTTGAGCCTTTGCTTTGAAAGCAGTTTTCATGATCTGAAAGCACCAGTGATCACGGCACATTTTAGAGGCGCAGATGTGAAGTTAAATGCTATCAACACATTTGTTGAAATGGCCGAAAGGGTAGTGTGCTTCGCTTTCTCGTCAAGTAACGGTCCCATCTTTGGGAACATGGCTCAGATGAACTTTCTGGTTGGCTATGACCTAGAAAAGGAAAGAATCTCCTTCAAACCCACAGACTGTACTAACCAGTGA 1269 0.4255 MSLFSTLVLILLSLHSSSSLEAHKGGFSVEIIHRDSPKSPLHRPTETQFQQVANAVRRSINRANHFNQNTPSTNITLDDGEYLLSYSVGTPPFQIYGVADTGSDITWLQCKPCKPCYNQTSPIFEPSKSSTYRTLSYSSRICKLVEGTTKDGDNCEYTAAYGGGSESQGDLSEETLTLDSTNGSSIQFPGTVIGCGRRNTGSYDRNSSGIVGLGRGPVSLISQLGSSIGGKFSYCLAPMSNTSSRLNFGDAAVVSGKGTVSTPIFSRGPVFYYLKLEAFSVGNKRIKLGSSSSESDGEGNIIIDSGTTLTYLRDDDYSKLESAVAHEVKLKRVKSPNKQLSLCFESSFHDLKAPVITAHFRGADVKLNAINTFVEMAERVVCFAFSSSNGPIFGNMAQMNFLVGYDLEKERISFKPTDCTNQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00171 422 Pfam Xylanase inhibitor C-terminal 272 415 IPR032799 -
Vimu5g00171 422 FunFam Probable aspartic protease At2g35615 61 249 - -
Vimu5g00171 422 SUPERFAMILY Acid proteases 77 419 IPR021109 -
Vimu5g00171 422 Gene3D Acid Proteases 60 248 IPR021109 -
Vimu5g00171 422 CDD pepsin_A_like_plant 81 419 IPR034161 -
Vimu5g00171 422 Gene3D Acid Proteases 249 422 IPR021109 -
Vimu5g00171 422 Pfam Xylanase inhibitor N-terminal 82 250 IPR032861 -
Vimu5g00171 422 ProSiteProfiles Peptidase family A1 domain profile. 82 415 IPR033121 -
Vimu5g00171 422 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 301 312 IPR001969 GO:0004190|GO:0006508
Vimu5g00171 422 PANTHER OS07G0603500 PROTEIN-RELATED 29 420 - -
Vimu5g00171 422 FunFam Aspartic proteinase CDR1 251 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00171 Vimu-Chr5 1412363 1413631 Tandem