Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00170 ATGTCATGCTTTTCTTCTCTTCTTGTTCTTCTGTGTCTCTACAACCTCTCTTTCTTAGAAGCTCTAAATGATGGATTCAGTGTGGAGATAATCCATCGTGATTCACCAAAATCACCGTTCTATAGTTCCTCAAAAACAAAATTCCAAAGGGTTTCCAATGCTCTGCGTCGTTCCATAAACCGTGGCAACCATTTCAGCAAATCCATGGTGTTTCCAAACACAGTAAGGGCAACTGTGATACCAGATTTTGGTGAATATTTGATGAGGTATGCAGTTGGAACTCCACTGCGTAAGGTGTTTGGAGTTCTTGATACAGGCAGTGACATCATTTGGTTGCAATGCAAACCATGTAGAAAATGTTATAGACAAGCCACACCTGTGTTTAATCCTTCAAAATCCAGAACATACAAAACCATCCCTTGCAATTCTACCATATGCCATTCTGTGCTAGGTACCTATTGCTCCTCTTCTAGCATCACCAAAAACTGTAAATATGATATCAGCTATGGTGATGGTTCATTCTCACATGGAGATTTGAGTGTGGAGACCCTCACTTTAGGCTCCACCAATGGATCTCCCATCCCACTTCCAAGAACTGCAATAGGGTGTGGCCATAACAATAGCATGCACTTCAAAGGGAAAAATTCTGGCATAGTTGGCCTAGGACGTGGACGTGTGTCCCTTATAAATCAATTGGGTTCTTCAGTAGGTTGGAAGTTTTCTTATTGTTTGGTCCCAGCAACTCTGCATTTCAATGCAAGTAGCAGACTGCATTTTGGAGATGCTGCTGTGGTTCGAGGACATGGAACTGTCTCAACCCCATTGTTTTCTAAACCTCAACAAGTATTTTACTACCTAACTCTAGAAGGGTTAAGTGTGGGAAGCCATAGAATAGAATTTGGAAGCTCTTTGTCTAGATTTGGAGGAGAGGGAAATGTCGTAATTGACTCAGGTACAACACTGACTCTTTTGCCAGATGATGTTTACAGATGGTTGGAATCAGCAGTGTCACATGCAGTTAAACTGAAGCCTATTGAGGATCCAAATCATGTGTTGGGACTCTGCTACAGAGGTACATTGGATAAACTAGATTTTCCAGTGATCACAGCACACTTTAGAGGGGCTAATGTGTTGCTGCATCCTATGAACACCTTTGTTGAAGTGGCTGATAAGGTTCTGTGCCTGGCTTTTCAGCCAACTCAAAATGGTGCTGTCTTTGGAAACTTGGCACAGCAAAACCTTTTGGTTGGCTATGATCTGAAGAAAAATACAGTGTCCTTTAAGCAAACAGATTGCACTAAGATGTGA 1308 0.4182 MSCFSSLLVLLCLYNLSFLEALNDGFSVEIIHRDSPKSPFYSSSKTKFQRVSNALRRSINRGNHFSKSMVFPNTVRATVIPDFGEYLMRYAVGTPLRKVFGVLDTGSDIIWLQCKPCRKCYRQATPVFNPSKSRTYKTIPCNSTICHSVLGTYCSSSSITKNCKYDISYGDGSFSHGDLSVETLTLGSTNGSPIPLPRTAIGCGHNNSMHFKGKNSGIVGLGRGRVSLINQLGSSVGWKFSYCLVPATLHFNASSRLHFGDAAVVRGHGTVSTPLFSKPQQVFYYLTLEGLSVGSHRIEFGSSLSRFGGEGNVVIDSGTTLTLLPDDVYRWLESAVSHAVKLKPIEDPNHVLGLCYRGTLDKLDFPVITAHFRGANVLLHPMNTFVEVADKVLCLAFQPTQNGAVFGNLAQQNLLVGYDLKKNTVSFKQTDCTKM 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00170 435 ProSiteProfiles Peptidase family A1 domain profile. 86 428 IPR033121 -
Vimu5g00170 435 FunFam Aspartic proteinase CDR1 262 435 - -
Vimu5g00170 435 SUPERFAMILY Acid proteases 83 432 IPR021109 -
Vimu5g00170 435 CDD pepsin_A_like_plant 85 432 IPR034161 -
Vimu5g00170 435 Pfam Xylanase inhibitor N-terminal 86 261 IPR032861 -
Vimu5g00170 435 FunFam Probable aspartic protease At2g35615 65 260 - -
Vimu5g00170 435 Gene3D Acid Proteases 63 259 IPR021109 -
Vimu5g00170 435 Pfam Xylanase inhibitor C-terminal 284 428 IPR032799 -
Vimu5g00170 435 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 313 324 IPR001969 GO:0004190|GO:0006508
Vimu5g00170 435 Gene3D Acid Proteases 260 435 IPR021109 -
Vimu5g00170 435 PANTHER OS07G0603500 PROTEIN-RELATED 28 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00170 Vimu-Chr5 1407106 1408413 Dispersed/Proximal