Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00162 ATGAACCTGGTGTATTTCTGTGTATCTATGAAATGGAGGCAACAAATCAGAAGAGTTTATGAGGAAATTTACCAGGAGGATCTTGTGAAGCGCTTAGAGTCTGAGATCAAAGGAGACTTTGAGAAAGCTGTGTACCGATGGATTCTGGAACCTGCAGATCGTGATGCTGTTTTGGCCAATGTCGCCATCAAGAGTGGCAAAAACTACAATGTCATTGTGGAAATTGCCACTATCTCCTCCCCAGAAGAGCTTTTGCTTGTTAGACGTGCTTATCTCAACCGCTACAAGCACTCTTTGGAAGAAGATCTTGCAGCACATACCACTGGCCATATACGCCAGGCAATTTTTGTGGTTGATATTGAGCAGCTTCTAGTGGGGTTGGTGACCTCATTCAGGTATGTTGGTGATGAGATCAATCCAAAATTGGCACAAAGTGAGGCTGAAATTCTACATGATGCTGTGAAAGAGAAGAAGGGTTCCTATGAAGAGGCCATCAGGGTCTTAACTACAAGGAGCAAGACTCAGCTCATTGCAACTTTCAACCGCTACAGAGAGATCCATGGCACTTCCATCTCTAAGAAACTGGTGGATGAAGGATCTAATGATTTTGAGAAGGCATTGTACACCACCATCCGTTCCATCAATGATCATTTTAAGTACTATGAAAAGGTGGTGAGAAATGCTATCAAGAAGGTTGGAACTGATGAGGATGCAGTGACCCGTGTGATTGTGAGTAGGGCTGAGAAGGATCTGAAGATAATCTCAGAGGTTTACTACAAGAGAAACAGTGTCAATCTTGAACATGCCATTGCCAAGGAAACTTCAGGGGATTACAAGAAGTTCCTTCTCACTCTGTTGGGGAAAGAGGACTAA 873 0.4341 MNLVYFCVSMKWRQQIRRVYEEIYQEDLVKRLESEIKGDFEKAVYRWILEPADRDAVLANVAIKSGKNYNVIVEIATISSPEELLLVRRAYLNRYKHSLEEDLAAHTTGHIRQAIFVVDIEQLLVGLVTSFRYVGDEINPKLAQSEAEILHDAVKEKKGSYEEAIRVLTTRSKTQLIATFNRYREIHGTSISKKLVDEGSNDFEKALYTTIRSINDHFKYYEKVVRNAIKKVGTDEDAVTRVIVSRAEKDLKIISEVYYKRNSVNLEHAIAKETSGDYKKFLLTLLGKED 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00162 290 Gene3D Annexin 218 290 IPR037104 GO:0005509|GO:0005544
Vimu5g00162 290 ProSiteProfiles Annexin repeat profile. 50 129 IPR018502 GO:0005509|GO:0005544
Vimu5g00162 290 Gene3D Annexin 50 118 IPR037104 GO:0005509|GO:0005544
Vimu5g00162 290 PRINTS Annexin family signature 273 286 IPR001464 GO:0005509|GO:0005544
Vimu5g00162 290 PRINTS Annexin family signature 229 249 IPR001464 GO:0005509|GO:0005544
Vimu5g00162 290 PRINTS Annexin family signature 32 48 IPR001464 GO:0005509|GO:0005544
Vimu5g00162 290 FunFam Annexin 141 215 - -
Vimu5g00162 290 FunFam Annexin 50 128 - -
Vimu5g00162 290 Pfam Annexin 58 115 IPR018502 GO:0005509|GO:0005544
Vimu5g00162 290 Pfam Annexin 13 44 IPR018502 GO:0005509|GO:0005544
Vimu5g00162 290 Pfam Annexin 146 207 IPR018502 GO:0005509|GO:0005544
Vimu5g00162 290 Pfam Annexin 224 285 IPR018502 GO:0005509|GO:0005544
Vimu5g00162 290 ProSitePatterns Annexin repeat signature. 233 285 IPR018252 GO:0005509|GO:0005544
Vimu5g00162 290 ProSiteProfiles Annexin repeat profile. 216 287 IPR018502 GO:0005509|GO:0005544
Vimu5g00162 290 Gene3D Annexin 6 49 IPR037104 GO:0005509|GO:0005544
Vimu5g00162 290 SMART annex3 66 118 IPR018502 GO:0005509|GO:0005544
Vimu5g00162 290 SMART annex3 233 285 IPR018502 GO:0005509|GO:0005544
Vimu5g00162 290 SMART annex3 13 47 IPR018502 GO:0005509|GO:0005544
Vimu5g00162 290 SMART annex3 159 210 IPR018502 GO:0005509|GO:0005544
Vimu5g00162 290 ProSiteProfiles Annexin repeat profile. 141 212 IPR018502 GO:0005509|GO:0005544
Vimu5g00162 290 Gene3D Annexin 141 215 IPR037104 GO:0005509|GO:0005544
Vimu5g00162 290 SUPERFAMILY Annexin 12 290 IPR037104 GO:0005509|GO:0005544
Vimu5g00162 290 PANTHER ANNEXIN 10 285 - -
Vimu5g00162 290 FunFam Annexin 217 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00162 Vimu-Chr5 1335111 1337136 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00162 5 1335111 1337136 Vimu5g00162 5 1335111 1337136 ECH
Vimu4g02019 4 22539986 22541905 Vimu5g00162 5 1335111 1337136 PCT