Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00144 ATGCTTCTACGTTATTCATCTTTTCTCATTGTCTTTGTATTTCTTCAACACATTTCCTTCTCAAAAGCCCTTAAAAGCAGTTTTAGAGTGGAGATGATCCACCGCGATTCACCAAAATCACCATTTTATCGTCCCACGGAAACTCATTTCCAACGAGTTGAAAATGCCATTCTTCGTTCCATCCATCGTGCTAATTACTTCAAACTAGACTCACACGATGTTGAGAGCACTATAACACCAGCTTTAGGAGAATACCTGCTAAACTATTCAGTTGGAACTCCACCAGTCCAAATCCTTGGTATAGTTGATACTGGTTCAAGCTTAATTTGGATGCAATGTCAGCCTTGTAAAGAGTGTTACAAACAAGACAGACCCATATTTGATCCTTCAACTTCAAGGACATACAATAGTATCCCTTGTGTTGCTGCTGAATGTCTGAATGACACACATACTTCTTGCGATTTTAACAATAGAGAGCACTGTACATATAAAGTGAGCTATGGTGATGGATCAACTACAGAAGGAGATTTCAGTTGGGAGACCATTAGTCTATATTCCAGTATTAAAGATGTTCCTGTAGCATTTCCCAAAACTGTGATTGGATGTGGACACAACAACGTTGGAATCTTTGGTGAGCAAAGCTCTGGCATAGTTGGCCTTGGAAACGGACCTTTCTCACTTGCAGGTCAGTTAAAACCTAAAACAGGTGGAACGTTTTCCTATTGTTTGACGCCAATGTATCAAGGAGATCCAAAACCTAGCTATCTCCATTTTGGAGATCGTGGTGAGGTTACTGTTGAAGGTGCCGTTTCAACCCCTCTAATCATAAGCAAAGTACGGCCATCCATGTACTTCGTGGTGATGGAAGCAATCAGTGTTGGAAGCAAGAGAATAGAGTTTCCCAGGAATGGTGAAGATGGAAACATATTAATTGACTCAGGGGCAACGATGACTTATTTGCCAGATGAGGTTTACTCAAGTTTGGAAGGAGAAATGGTAAATTCAGTTAAATTACCTCGTACTAATAGCCCAATAAAAGGTTTGAGGTTGTGCTTCGCAATTACACCTGGAGAAGAATATCATATACCAATAGTGTATGCACATTTTAAAGGTGGTGGAACTGTGAAATGGTATAATATCAACACCTTTGTCAAGGCCACTGAAACTGTCATATGTTTGGCTTTCCGTTCAGGTTCTCAAGCCATTTTTGGGAATTTGGCACAGCAGGATATCTTGGTTGGCTATGACACACAACATAACACAGTCACCTTTCTCAACACAGATTGTACCTCCGAGTTATAG 1302 0.404 MLLRYSSFLIVFVFLQHISFSKALKSSFRVEMIHRDSPKSPFYRPTETHFQRVENAILRSIHRANYFKLDSHDVESTITPALGEYLLNYSVGTPPVQILGIVDTGSSLIWMQCQPCKECYKQDRPIFDPSTSRTYNSIPCVAAECLNDTHTSCDFNNREHCTYKVSYGDGSTTEGDFSWETISLYSSIKDVPVAFPKTVIGCGHNNVGIFGEQSSGIVGLGNGPFSLAGQLKPKTGGTFSYCLTPMYQGDPKPSYLHFGDRGEVTVEGAVSTPLIISKVRPSMYFVVMEAISVGSKRIEFPRNGEDGNILIDSGATMTYLPDEVYSSLEGEMVNSVKLPRTNSPIKGLRLCFAITPGEEYHIPIVYAHFKGGGTVKWYNINTFVKATETVICLAFRSGSQAIFGNLAQQDILVGYDTQHNTVTFLNTDCTSEL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00144 433 CDD pepsin_A_like_plant 84 429 IPR034161 -
Vimu5g00144 433 Gene3D Acid Proteases 259 432 IPR021109 -
Vimu5g00144 433 FunFam Probable aspartic protease At2g35615 65 259 - -
Vimu5g00144 433 SUPERFAMILY Acid proteases 79 429 IPR021109 -
Vimu5g00144 433 Pfam Xylanase inhibitor N-terminal 85 260 IPR032861 -
Vimu5g00144 433 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 309 320 IPR001969 GO:0004190|GO:0006508
Vimu5g00144 433 Pfam Xylanase inhibitor C-terminal 284 424 IPR032799 -
Vimu5g00144 433 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Vimu5g00144 433 Gene3D Acid Proteases 65 258 IPR021109 -
Vimu5g00144 433 ProSiteProfiles Peptidase family A1 domain profile. 85 425 IPR033121 -
Vimu5g00144 433 PANTHER OS07G0603500 PROTEIN-RELATED 30 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00144 Vimu-Chr5 1203114 1204415 Tandem