Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00140 ATGGGTGCCGTTTGTTGTGTTGCTGCCAAAGACAAAACTTTACAAAGTGCACCACCCAGTGAAATCATACATCGGAATATTCGATATTCTCCAACATGGAACTTTCGGTGGGATCATCGAGGGCGTGTAGCTGGTGAAGATACTGCAGTAACTTGGTTTTCTAATGGTATTAGCAGGAATGATGGACTGGAGAATAAAAATGAACTCTCGTATGCATCGGACGATGGAAGCCCGTTGCAGAATTATCAAAGGAATAGATGGCAAAAATCCGCAGTTTCGGAAGGAACTGCTAGGAACCTGATAAATTCACCTTCAGATCAAACTATTTCAAGGAATGTCTCAATAAATGTGAGCATGGAACAGGCGAAGGGGTTGGCAGAATCATCAACAATATCATGTCCGTATCCCACAAAACCTCTACATTCATTGCCTTCTACTTCTTCATCAATATCTCCTCAGCCTTACGATAGTCACCCATTGCCATCCAGCTCAACCACTTCAAGGTTGCCTTGCCATTCCACAGGAGACCAAGTATCTTATCAAGTTTCTGATAGCCAAACCTTGGGATATAAGACACCTAGCAACTCTTATGTATCTGAAGAGAGGCCAGTGTTGCCTTCGGGGAGCAATGAATCTGGTATGCACTCCCATGGCGGGTCTTCAGGTAATTGGTCTAGGTCTGGCTTTTCTGAGCTAGCTGGCAGTTCCTTCAAAGAAAGATGGTCATTTGATAGTGAGTCATTTGGTTTTAATTGTGAAAGGTTGGTTAGATCCAGTAGTCGGTTTTCAAATTCTCCAGTTGATTTCCAAACATGTGGTGTTTGCTCAAAACTTTTAACTGAGAAGTCTTCTTTGGGCACCCAAAAGATAATTGCTAGTAATGACCTTTCTGTAGTTTCTGTCCTTATCTGTGGGCATGTTTATCATGCTGAATGTTTGGAGTGTTTGACACCTGAAGTCAACAAGTATGATCCACTTTGTCCAGTTTGCACTTTTGGTGAGAAATATACTCTTAAGTTGTCTGAAAAAGTTCTGAAAGCTGAAATGGATTTGAAGGCTAAAAATAAGAAATCAAGAAACCGAATTGTGGACAGTGATATTGACGATAATTCTGTTGTGCATGAACACTTTAGAGAAAAATGGCGTCAAGGTAGCAAAGGTCTTCGAATTGATTCTAGTTCTAGTGGGAGAAGCTCTAAAGGGAAACCTTTTCTTAAGAGACATTTCTCCTTTGGCTCAAGGAGTTCCAAACCCATGCTAGATAATCAATCAAGCCGGAAAAAAGGCTTCTTTTGGGCAAAATCTAGCAGGGAATAA 1317 0.4123 MGAVCCVAAKDKTLQSAPPSEIIHRNIRYSPTWNFRWDHRGRVAGEDTAVTWFSNGISRNDGLENKNELSYASDDGSPLQNYQRNRWQKSAVSEGTARNLINSPSDQTISRNVSINVSMEQAKGLAESSTISCPYPTKPLHSLPSTSSSISPQPYDSHPLPSSSTTSRLPCHSTGDQVSYQVSDSQTLGYKTPSNSYVSEERPVLPSGSNESGMHSHGGSSGNWSRSGFSELAGSSFKERWSFDSESFGFNCERLVRSSSRFSNSPVDFQTCGVCSKLLTEKSSLGTQKIIASNDLSVVSVLICGHVYHAECLECLTPEVNKYDPLCPVCTFGEKYTLKLSEKVLKAEMDLKAKNKKSRNRIVDSDIDDNSVVHEHFREKWRQGSKGLRIDSSSSGRSSKGKPFLKRHFSFGSRSSKPMLDNQSSRKKGFFWAKSSRE 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00140 438 PANTHER EXPRESSED PROTEIN 1 335 - -
Vimu5g00140 438 ProSiteProfiles Zinc finger RING-type profile. 272 331 IPR001841 -
Vimu5g00140 438 MobiDBLite consensus disorder prediction 387 438 - -
Vimu5g00140 438 SUPERFAMILY RING/U-box 265 331 - -
Vimu5g00140 438 CDD RING-H2 272 330 - -
Vimu5g00140 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 332 IPR013083 -
Vimu5g00140 438 MobiDBLite consensus disorder prediction 136 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00140 Vimu-Chr5 1136784 1139218 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00140 5 1136784 1139218 Vimu5g00140 5 1136784 1139218 ECH