Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00133 ATGGGATTTTCTCCTGACCCTGGTAGAGACAAAAGACTGAAAATTTCAAGTTATAGCCTGTCATACTCAGCACATGATAAGACTTCGAATGTTGTTGATTACAACAATCCATTTGCAATATCTGATGTTCTGGATAATTTAGAGAGTGGAAAATTTGGAAGTGTCACAAAGGACATAGAAGACCTTATTGCCCAAAAAATGAAAATATTGGGCCCTTACTTTGTTAAATATCCCATACTTGTGGATCAATGGAAACATGATGAAGAAACTCCTAAGTTGGAAAATCAACTAGTTACTGTTTCGACGGATCAAAATGTTATAGATCTTGAGGAGGAACACACCAGAAAGGATGTCCCTGCAACACAAGATCCTATTGTGATTATTGATTCAGATGATGAAGATGATGGAGATGAAAAATCTATGGTCCCATTTCATGAAGTTGTGTTGCCGACACTAGTTGCACCGTCTCCTGCATTGAAGATAACTGGGTATCTACCTGCCATTCCTTACCTGGAAGAAAGAGATCTAATAATTGAGACAAGTATGGAGGATAAACCTAACAATACTCAGAACAATAGAGGCATTTATGTTGGTGTACAGGAAGAGGAAGAAGATGAGCTTAATACTGAAGATGACGGTCTAGGAGATATTTGGAAGGAGATGTCAATGGCAATAGAATGTTCCAAATACAAGGTTAAACGCAGCACAAGAACTTATGCATCTGATTCATGGAATACCAAGAAAACAGATGCATTTGGAATTAATGTTGTTAAAGATGACCTCGTAGTTACTGAAATCCCAGCACACCCTAGACACATGAAACAGATGAAGCCCCATCAAGTTGAAGGATTCAATTTTCTTGTTAGAAATCTTGCAGGCGACCATCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGATCTGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTATCCGAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAATATGGCAGGTGGAGAACATACCTCTATATGACTTCTACACAGTGAAGGCAGACACTAGAAGTCAACAACTTGAAGTGCTGAATCAATGGAGGGAGAAGAAGAGCATTCTTTTCTTAGGATACAAACAGTTCTCCACTATTGTCTGTGATAATGGGAACGATATATCATCACGTTGCCAAGATATTTTACTGAAAGTTCCTTCAATTCTTATTTTAGATGAGGGACACAATCCTAGGAATGAAAACACAGATATACTACAGTCTCTTGTAAAAGTTGAGACGCCTAGAAAAGTTGTACTGTCAGGAACTCTTTATCAAAATCATGTCAAGGAGGTGTTTAACATTCTAGATCTTGTTCGGCCGAAATTTTTGAAGATGGAAACATCAAAACCTATCGTGAGGCGCATCCAAAGTAGAGTTTATATACCAGGGATGAAAGGATTCTCTAATTTAGTTGAAAACACATTGCAGCAGGACACTGATTTTAAAACGAAAATAGCTGTTATACAAGATTTGCGTGAGATGACGAGCAAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAACTTCCCGGTCTAGTGGATTTTACTTTAATGCTCACTCTTAGCCCTAGCCAGAAGACTGAAGTAGCAAAAATAAAAAAACAATCTACAAGAAAGTTCAGGATATCTTCTGTAGGAAGTGCTGTCTATCTGCATCCTAAACTGAAACCGCTAGCAGAAAAAAATTGTGGTAAAACTCCTATATCTGATCATGTAATGGATGATTTGGTAGATAAACTGGATATTAGAGATGGTGTGAAGTCAAAATTTTATCACAACATGCTAAATCTGTGTGAATCAGCAGGGGAGAAGCTTCTAGTTTTCAGTCAGTATCTGTTACCCTTGAAATATTTAGAAAGGTTGACTATTAACTGGAAAGGCTGGAGTCTTGGAAGAGAAATTTTTGTAATCTCAGGAGATTCAACTCCTGAGCAGCGAGAATGGTCCATGGAAAAATTCAACAATTCTCGTGAAGCTAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGTATCTCACTGGTTGGGGCCTCCCGCATAATTATCTTGGACGTTCATCTCAATCCATCAGTTACACGTCAAGCTATAGGCCGTGCATTTAGACCCGGCCAGAAGAAGAAGGTGTTTGTGTATCGTTTAGTATCTGCTGATTCTCCAGAAGAAGAAGATCACCATGCCTGTTTCAAGAAAGAACTAATTTCAAAAATGTGGTTTGAATGGAATGAGTATTGCGGTGATCGAGCTTTTGAAGTTGAGGCAGTTGAGGTGAAAGATTGTGGTGATGAATTTCTTGAAAGTCCTCTGTTAGGGGAGAATGTAAAAGCTTTATATAGAAGGTCAATGACATTCTTGCTCTTTTTTCTTATCATATGCTTGTCTTGTTAG 2472 0.3851 MGFSPDPGRDKRLKISSYSLSYSAHDKTSNVVDYNNPFAISDVLDNLESGKFGSVTKDIEDLIAQKMKILGPYFVKYPILVDQWKHDEETPKLENQLVTVSTDQNVIDLEEEHTRKDVPATQDPIVIIDSDDEDDGDEKSMVPFHEVVLPTLVAPSPALKITGYLPAIPYLEERDLIIETSMEDKPNNTQNNRGIYVGVQEEEEDELNTEDDGLGDIWKEMSMAIECSKYKVKRSTRTYASDSWNTKKTDAFGINVVKDDLVVTEIPAHPRHMKQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQIWQVENIPLYDFYTVKADTRSQQLEVLNQWREKKSILFLGYKQFSTIVCDNGNDISSRCQDILLKVPSILILDEGHNPRNENTDILQSLVKVETPRKVVLSGTLYQNHVKEVFNILDLVRPKFLKMETSKPIVRRIQSRVYIPGMKGFSNLVENTLQQDTDFKTKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTLMLTLSPSQKTEVAKIKKQSTRKFRISSVGSAVYLHPKLKPLAEKNCGKTPISDHVMDDLVDKLDIRDGVKSKFYHNMLNLCESAGEKLLVFSQYLLPLKYLERLTINWKGWSLGREIFVISGDSTPEQREWSMEKFNNSREAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLVSADSPEEEDHHACFKKELISKMWFEWNEYCGDRAFEVEAVEVKDCGDEFLESPLLGENVKALYRRSMTFLLFFLIICLSC 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00133 823 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 192 808 IPR044567 GO:0080188
Vimu5g00133 823 SMART helicmild6 647 732 IPR001650 -
Vimu5g00133 823 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 617 784 IPR001650 -
Vimu5g00133 823 Pfam SNF2-related domain 296 558 IPR000330 GO:0005524|GO:0140658
Vimu5g00133 823 Gene3D - 244 488 IPR038718 -
Vimu5g00133 823 Gene3D - 538 788 IPR027417 -
Vimu5g00133 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 470 IPR027417 -
Vimu5g00133 823 CDD SF2_C_SNF 621 743 - -
Vimu5g00133 823 Pfam Helicase conserved C-terminal domain 624 731 IPR001650 -
Vimu5g00133 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 770 IPR027417 -
Vimu5g00133 823 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 290 468 IPR014001 -
Vimu5g00133 823 SMART ultradead3 272 481 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00133 Vimu-Chr5 1062119 1068369 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu5g00133 SNF2_N 9.7e-19 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00133 5 1062119 1068369 Vimu5g00133 5 1062119 1068369 ECH