Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00131 ATGAAGTCCTCTGTTGACAACGTGTTGTTGTCAGCTAAGCGCTGTCGTTCAACCGAATCTTCCTCTAGCCCTGACATAGGCAAAAGACAGAAGTTATCAGATGTCGCTGATCATTCGAATGCATCTGCAATTTTGGATGTTGTGGTTCATACAGAGCATGGAAAATATGGAAGTGTCACAAAGGAGATAGAGGATCTTGTAGCCATAAAAATGCAGATACTTGGACCTTACTTTGCCAAGTATCCCGGACTTATTAATCAATTCATGAATGTGGTAACTGACCACGATGAAGACACTGGTTTGACATATCATAATGTCATAGATTTGACGGGGGGAAACATTGAGAAGAGTGTTCATGCAGCTCCAGTTCCTGTTATTCACATTGATTCAGATGTGGAAGATGATGGAGATAAAAAGGCTATTGTTCCTTTTCATGAAGCTTCAGAAGTGGAAGATGATATACACAATAAATCTATTGTTCCATTTAATGAAGCTTCAGAAGAAGACGATTATAGACAAAATAAATCAATTGTTCATGAAATTGTGTTGCCGCTAGTTGCACTGTCTCCTGCAGTTAGGCAGCGTACTCCCATTCCTAGCCATCGCAAAAGTAAAGATCCGAAAATTGAGACAAGTATCGCGGGTAAAGGTGTTTATATCGGTGTAAAGGAGGAAGATCATCATCAGGTCAACCCCGCAGATAATGAGGGTCTAGAAGATCTTTGGAAGGAGATGTCGATGGCAATGGAGTGTTCCAAGGTTGTTTCCGCGGATCCTCTGCCAGATGAAGAAGCAGAAAGAGATGAGGAGTGCGATCATTCTTTTATTTTAAAAGATGATATTGGTTATGTTTGTCGGGTTTGTGGAATTATTGACCGAAGAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAGCGGAGCACAAGGACTTATGCACATGACTCCCATAACACCAAAACAAAAGCAGATGTATTTGCATATAATATTGCTCAAGATGATTTCATAGTAACTGAATTCTCAGCACATCCTAGACACATGAAACAGATGAAACCTCATCAAATTGACGGATTCAATTTTCTTGTTAGAAATCTTGGAGGTGATCATCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGTTCAGGGAAAACATTTATGATAATAAGTTTCGTGCAAAGTTTTCTAGGGAGGTATCCGAATGCAAGACCATTGGTAGTACTTCCAAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAGACATGGCAAGTAGAAGACATACCTCTATACGACTTTTATACAGTGAAGGCAGATAATAGAAATCAACAAATGGAAGTGTTGAAGCTATGGAAGGAGAAGAAAAGTATCCTTTTCTTAGGATATAAACAGTTCTCCTCCATTGTCTGTGATAAGGAGACCAACCATATATCGTCATCATGCCAAAAGATTTTACTCAGCATTCCTTCAATACTTATTTTAGATGAGGGGCATAATCCTAGGAATGAAAACACAGATATGGTTCAATCCCTTGCAAAAGTTCACACACCTAGAAAAGTTGTTCTGTCGGGAACGCTTTATCAAAATCATGTAAGGGAGGTGTTTAACATTCTAGATCTTGTTCGTCCAAAGTTTTTGAAGATGGAAACATCAAAAGCTATCTGCAGGCGCATTTATAGTAGAGTTCATATACCAGGTGTGAGAACCTTCTATGATATTGTTGAAAACACTTTGAAGGGCACAGACTTTAAAGCGAAAGTAGCCGTCATACAAGATTTACGTGAGATGACAAAGAGCGTCCTTCATTATTATAAAGGGGATTTTCTTGATGAGCTTCCTGGTCTCGTTGATTTTACTGTGGTTCTCAATCTTAACCATAAACAAAAGCGTGACATTGAACAATTAAAAAAGTCATCTGGAAAGTTCAAGATATCTTCTGTAGGAAGCGCAGTCTATTTGCACCCTAACCTGAAATCTTTAGCTCAAAAATGTGGAGAAAATAATATATCTGATGATATAATTGATGCTCTGATAGAAAAATCAGACGCCAGAGATGGTGTGAAGTCCAAATTCTTTTGGAACATGCTAAATTTGTGTGAATCAGCCGGAGAGAAACTCCTAGTATTTAGTCAATACTTGCTTCCTTTGAAATATTTAGAAAGGTTAACCATTCAAAGTAAAGGGTGGAGTCTAGGAAAGGAAATATTTGTAATCTCAGGAGAATCTAGCTATGAGCAGCGAGAATGGTCCATGGAAAGATTTAACAATTCTCCTAGTGCCAAAGTCTTCTTTGGCTCCATCAGGGCTTGTGGAGAGGGCATATCATTGGTAGGGGCATCACGCATAGTTATATTGGACGTTCATCTCAATCCTTCAGTTACTCGCCAAGCTATTGGTCGTGCATTCAGACCTGGCCAGCAGAAGAAAGTTTTTGTGTATCGATTGGTGTCTGCTGATTCTCCAGAAGAGGAGGATAACAACATTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAACGAGTATTGTGGTGATCGAGCATTTGAAGTTGAGGAAGTTCTTCTGAAAGAGTGTGGCGATCTTTTTCTTGAGAGTCCATTACTTGGAGAAGATGTAAAAGCTTTGTACAAAAGGTCAGTGACCATTCCCCCAATTTCTATGAATAAGCAATTATTTTTCACTTTCCTGTGA 2697 0.3893 MKSSVDNVLLSAKRCRSTESSSSPDIGKRQKLSDVADHSNASAILDVVVHTEHGKYGSVTKEIEDLVAIKMQILGPYFAKYPGLINQFMNVVTDHDEDTGLTYHNVIDLTGGNIEKSVHAAPVPVIHIDSDVEDDGDKKAIVPFHEASEVEDDIHNKSIVPFNEASEEDDYRQNKSIVHEIVLPLVALSPAVRQRTPIPSHRKSKDPKIETSIAGKGVYIGVKEEDHHQVNPADNEGLEDLWKEMSMAMECSKVVSADPLPDEEAERDEECDHSFILKDDIGYVCRVCGIIDRRIETIFEFQYKVKRSTRTYAHDSHNTKTKADVFAYNIAQDDFIVTEFSAHPRHMKQMKPHQIDGFNFLVRNLGGDHPGGCILAHAPGSGKTFMIISFVQSFLGRYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADNRNQQMEVLKLWKEKKSILFLGYKQFSSIVCDKETNHISSSCQKILLSIPSILILDEGHNPRNENTDMVQSLAKVHTPRKVVLSGTLYQNHVREVFNILDLVRPKFLKMETSKAICRRIYSRVHIPGVRTFYDIVENTLKGTDFKAKVAVIQDLREMTKSVLHYYKGDFLDELPGLVDFTVVLNLNHKQKRDIEQLKKSSGKFKISSVGSAVYLHPNLKSLAQKCGENNISDDIIDALIEKSDARDGVKSKFFWNMLNLCESAGEKLLVFSQYLLPLKYLERLTIQSKGWSLGKEIFVISGESSYEQREWSMERFNNSPSAKVFFGSIRACGEGISLVGASRIVILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVSADSPEEEDNNICFKKELISKMWFEWNEYCGDRAFEVEEVLLKECGDLFLESPLLGEDVKALYKRSVTIPPISMNKQLFFTFL 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00131 898 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 689 856 IPR001650 -
Vimu5g00131 898 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 364 543 IPR014001 -
Vimu5g00131 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 566 IPR027417 -
Vimu5g00131 898 MobiDBLite consensus disorder prediction 14 28 - -
Vimu5g00131 898 SMART helicmild6 716 804 IPR001650 -
Vimu5g00131 898 Pfam Helicase conserved C-terminal domain 698 803 IPR001650 -
Vimu5g00131 898 CDD SF2_C_SNF 693 815 - -
Vimu5g00131 898 MobiDBLite consensus disorder prediction 14 34 - -
Vimu5g00131 898 Gene3D - 612 867 IPR027417 -
Vimu5g00131 898 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 224 882 IPR044567 GO:0080188
Vimu5g00131 898 Gene3D - 316 561 IPR038718 -
Vimu5g00131 898 Pfam SNF2-related domain 370 632 IPR000330 GO:0005524|GO:0140658
Vimu5g00131 898 SMART ultradead3 346 553 IPR014001 -
Vimu5g00131 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 842 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00131 Vimu-Chr5 1046976 1051555 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu5g00131 SNF2_N 3.4e-19 CL0023