Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00125 ATGCACATAAAGGAGGTTTGCTTGGAAGGGTTTAAGTCATACGCGACGCGCACCGTTGTTCCGGGCTTCGACCCCTTCTTCAACGCCATCACTGGCTTGAACGGTTCAGGCAAATCGAACATTCTCGATTCCATCTGCTTCGTTCTTGGCATCACCAATTTGCAGCAGGTTAGGGCTTCCAACCTCCAGGAACTCGTCTACAAGCAGGGTCAGGCCGGAATTACCAAAGCCACCGTCTCCATCGTCTTCGACAACTCCGACCGGTCGCGAAGCCCTCTCGGTTACGAAGGCCATCCCGAGATCACAGTAACAAGACAGATTGTGGTAGGGGGAAGGAACAAATATTTGATCAATGGGAAGCTTGCACAGCCTAGTCAAGTTCAGAACCTTTTTCACTCAGTGCAGCTAAATGTTAATAATCCACATTTCCTTATAATGCAAGGGCGGATCACTAAGGTTTTGAATATGAAACCGCCAGAGATATTGTCCATGCTTGAGGAAGCTGCAGGGACGAGAATGTACGAGACAAAGAAAGAGGCTGCTTTAAAAACACTTGAGAAGAAGCAGAGCAAGGTTGACGAGATTAACAATCTTCTTGATCAGGAAATACTGCCTGCTCTGGAGAAGTTAAGGAAAGAAAAGACACAGTACATGCAATGGGCTAATGGCAATGCTGAGTTAGATAGGCTGAGAAGGTTCTGTATTGCTTATGATTATGTTCAAGCGGAGAGGATTAAAGACAATGCTGCTTCGGAGGTGGAGGAAGTGAAAGGCAAGATAGCTGGGATTGATGATGCTGTTAAGACAAATCAGGTGGAAATAAAGGAAATGGAGGCCAAAATAGCTCAGTTGTCTGCTGAAAAGGAAGCTAGCATGGGTGGAGAAATGAAATCTCTCTCAGAGAAGGTGGATGCGCTTTCCCAGAATCTTGTGAGGGAAACATCTGTATTAAATAACAAAGAAGACTCTTTGAGGAGTGAAGAAGCCAACCAAGCAAATATTGTTAAAAACATTGAAGAGCTGAAGCAATCTGTAGATGAGAAGGCGTCTGCTGTTAAAAAGGCTGAAGAGGGGGCATCAGGTCTGAAAAATAAAGTTGAGGAGCTTACAAATAGTCTAGAGGAGCATGAAAAAGAATACCAGGGTGTTTTAGCCGGCAAAAGCAGTGGTAATGAGGAGAAGTGCTTGGAGGATCAACTAAGGGATGCAAAGGTAGCAGTCGGGAGTGCTGAGACTGAATTGAAACAACTGAAAGCCAAGATTAGCCATTGTGAAAAGGAACTGAAGGAAAAAACAAATCAATTAAAGTCAAAACGTGAAGAAGCTAATGCTGTCGTAAAAGAGCTCAACTCCAGACAAAAAGATGTGGAGAATATAAGAACTGAGTTGGAATCTCTCTCATATAAGGAGGGTGAGATGGAGGATTTACAAAAGGAGCGTACGACTGAGATGGACTGTGTGCAAAAGTGGAAGGATGAGATACGCAATCTTTCAGCTTACCTGGCGAATGTTGAATTTACTTACCTTGATCCTGTCAAGAACTTTGATAGGTCAAAGGTGAAAGGTGTTGTTGCAAAACTCATCAAAGTAAAGGATAGGTCCACAATGACTGCCCTAGAGGTTACAGCTGGTGGGAAGTTGTATAATGTTGTTGTTGACACAGAAAATACTGGGAAGCAGCTACTACAAAATGGAAATCTTAGAAGAAGAGTGACAATTATACCTCTGAACAAAATACAATCCCATCCCGTTCCCTCAAGAGTTCAACAAGCTGCTGTTAGAGTGGTGGGGAAGGGGAACGCTGAAGTGGCCCTTTCTTTGGTTGGTTATGAAGAAGAATTAAAGAGTGCAATGGAATATGTATTTGGTTCAACCTTTGTTTGCAAAACCATTGATGCTGCAAAGGAGGTGGCATTTAATAGGGACATTCACACAACAAGTGTCACTCTTGAAGGAGATATATTTCAACCAAGGGGTCTTCTGACTGGTGGAAGCAGGAAGGGAAGTGGTGATCTTTTGGGACGACTTCATGCTTTGGCTGAGGCCGAGTCAAAACTTTCAGTGCATCAAAGAAGGTTGTCAGAGATCGAGGCAAAGATATCAAAGCTTCTTCCGCTTCAGAAAAAATTTATAGATCTCAAAGCACAATTAGAACTGAAGTCGTACGACCTTACATTGTTTCAGAGTAGAGCTGAGCAAAATGAGCATCATAAGCTTGGAGAATTAGTGAAGAAGATTGAGCAAGAGCTAAACGAAGCAAAATCGACAATCATGGACAAGCAACTTTTGTATGAGGACTGCGTCAAAACTGTTTCATCTCTTGAGAATTCAATAAAAGACCATGACCAAAACAGAGAAAGTAGACTAAAAGGATTGGAGACAAAGATAAAATCTATAAAATCTCAAATGCAGTCATCTTTAAAAGATCTGAAGGGGCATGATAATGAAAAGGAGAGACTTGTAATGGAAATGGAAGCTGTTATCCAGGAGCAAGCATCCCTGGAGAATCAGTTAGCATCATTGGGAGCACTGATAAGCAATCTTACCTCCGATGTAGAGGAGCAAAAATTCAAAGTTGTTGCTGCACGGGAAAACCTGGACCAAGTTCAATCTGAGCTGAAATCAGTTAGCCTGAAAATGAAAGAACGTGATAAGGAAATCAGTGCTATCATTAAAGAGCAACAAAAACTTGAACATAAAATTACTGAGAGTAATCTAGAAAGGAAGAGGATGGAAAATGAGGTAAAACGAATGGAGATGGAACAGAAAGACTGCTCTGTCAGAGTAGATAAATTAATTGAGAAGCATGCTTGGATTGCTTCTGAAAAACAATTGTTTGGTAGAAGTGGGACAGATTATGATTTTTCTTCCTGTGATCCAAATAAATCAAGGGAACAGCTTGAGAAGCTTCAGGCTGAGCAATCTGGACTTGAGAAAAGGGTGAACAAGAAAGTGATGGCAATGTTTGAGAAGGCAGAGGACGAGTACAATGATTTGATGTCAAAAAAATATATAATTGAGAATGACAAGTCCAAAATCAAGAAGGTGATTGAAGAGCTAGATGAGAAGAAGAAGGAGACACTAAATGTTACCTGGATCAAAGTAAATAAGGACTTTGGGTCTATCTTTTCTACACTATTACCGGGAACAATGGCTAAACTAGAACCTCCAGAAGGATGCAGCTTCCTTGACGGTCTTGAGGTTCGTGTTGCATTTGGAAGTGTGTGGAAGCAGTCGTTGTCTGAATTAAGTGGAGGTCAGCGATCGCTGCTTGCACTTTCTCTGATTCTGGCACTGCTTCTGTTCAAACCCGCTCCACTTTACATCCTTGACGAGTTAGAACTTGGTGATATGTCAACCTCAGAGGTTGATGCCGCTCTTGATTTGAGCCACACACAAAACATAGGGAGAATGATAAAGGCTCATTTTCCACACTCTCAGTTTATTGTGGTTTCCTTGAAGGAAGGCATGTTCAATAACGCAAATGTTCTTTTCCGAACAAAATTTGTAGATGGTGTTTCAACTGTTCAGCGAACAGTTGCTTCTAAACAAAGCAAATGA 3561 0.4184 MHIKEVCLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSDRSRSPLGYEGHPEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINNLLDQEILPALEKLRKEKTQYMQWANGNAELDRLRRFCIAYDYVQAERIKDNAASEVEEVKGKIAGIDDAVKTNQVEIKEMEAKIAQLSAEKEASMGGEMKSLSEKVDALSQNLVRETSVLNNKEDSLRSEEANQANIVKNIEELKQSVDEKASAVKKAEEGASGLKNKVEELTNSLEEHEKEYQGVLAGKSSGNEEKCLEDQLRDAKVAVGSAETELKQLKAKISHCEKELKEKTNQLKSKREEANAVVKELNSRQKDVENIRTELESLSYKEGEMEDLQKERTTEMDCVQKWKDEIRNLSAYLANVEFTYLDPVKNFDRSKVKGVVAKLIKVKDRSTMTALEVTAGGKLYNVVVDTENTGKQLLQNGNLRRRVTIIPLNKIQSHPVPSRVQQAAVRVVGKGNAEVALSLVGYEEELKSAMEYVFGSTFVCKTIDAAKEVAFNRDIHTTSVTLEGDIFQPRGLLTGGSRKGSGDLLGRLHALAEAESKLSVHQRRLSEIEAKISKLLPLQKKFIDLKAQLELKSYDLTLFQSRAEQNEHHKLGELVKKIEQELNEAKSTIMDKQLLYEDCVKTVSSLENSIKDHDQNRESRLKGLETKIKSIKSQMQSSLKDLKGHDNEKERLVMEMEAVIQEQASLENQLASLGALISNLTSDVEEQKFKVVAARENLDQVQSELKSVSLKMKERDKEISAIIKEQQKLEHKITESNLERKRMENEVKRMEMEQKDCSVRVDKLIEKHAWIASEKQLFGRSGTDYDFSSCDPNKSREQLEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKYIIENDKSKIKKVIEELDEKKKETLNVTWIKVNKDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDELELGDMSTSEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVASKQSK 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00125 1186 Coils Coil 736 763 - -
Vimu5g00125 1186 Coils Coil 852 886 - -
Vimu5g00125 1186 PIRSF SMC 1 1166 IPR024704 GO:0005524|GO:0016887
Vimu5g00125 1186 Coils Coil 1006 1026 - -
Vimu5g00125 1186 FunFam Structural maintenance of chromosomes 2 995 1184 - -
Vimu5g00125 1186 Gene3D - 1 202 IPR027417 -
Vimu5g00125 1186 Coils Coil 178 198 - -
Vimu5g00125 1186 Coils Coil 982 1002 - -
Vimu5g00125 1186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1168 IPR027417 -
Vimu5g00125 1186 Pfam SMC proteins Flexible Hinge Domain 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vimu5g00125 1186 Coils Coil 789 837 - -
Vimu5g00125 1186 Coils Coil 894 928 - -
Vimu5g00125 1186 Coils Coil 239 259 - -
Vimu5g00125 1186 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Vimu5g00125 1186 Coils Coil 324 386 - -
Vimu5g00125 1186 Pfam RecF/RecN/SMC N terminal domain 2 420 IPR003395 -
Vimu5g00125 1186 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1 1184 - -
Vimu5g00125 1186 FunFam Structural maintenance of chromosomes 2 1 202 - -
Vimu5g00125 1186 Coils Coil 267 287 - -
Vimu5g00125 1186 Gene3D - 591 666 - -
Vimu5g00125 1186 FunFam Structural maintenance of chromosomes 2 518 581 - -
Vimu5g00125 1186 Pfam RecF/RecN/SMC N terminal domain 870 1171 IPR003395 -
Vimu5g00125 1186 Coils Coil 400 466 - -
Vimu5g00125 1186 SUPERFAMILY Smc hinge domain 479 686 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vimu5g00125 1186 Gene3D - 411 590 - -
Vimu5g00125 1186 Coils Coil 679 699 - -
Vimu5g00125 1186 Gene3D - 995 1185 IPR027417 -
Vimu5g00125 1186 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00125 Vimu-Chr5 1014634 1026874 Dispersed