Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00123 GAAAAAAATTCTAAGATGCCAGGAAAACCTGACTGTGATGATTACGGTGGTAAAGAGTACCAAAACATCAAACATGACTTGTCTTCAATCTCATTTAGCATGGACAAATACCTTGCTCCCAATCCTCACACAGAATTTGTTGGTCATTCAGTTGTTTTGACATCTCCTTATTCAGATGCACAGTATGGTCAAATATTCACTACTTATGGTCAACAAGTGATGATAAACCCTCCATTGTATGGAATGCATCAAGCTAGAATGCCTTTGCCACTCGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCCGAGCTTGAAAAGAAAGTAATCAGAAACAGAAAGCCATACCTGCACGAATCTCGACACCTACATGCCATGAGAAGGGCAAGAGGCAATGGTGGTCGCTTTCTCAACACAAAGAAGCTTGAAAATAACAGTTCTAGTGTTACTTCTGACGAAGGCAACAATAGTGGTGCAAACCCCTCAGCAAACTCATTTAACATTCTGCATAGGCTCACCACCAACAATGAGAATCTAGCCTCATCAAACATGGTTCAGGACATGCACAGAGTTCAGAGTTTCAACAATGGTTACCATAATGGAAATTGTCTTACAGCACTATACCTTTCACAAGTGAAGAAAGGCTTAATCTCATTCAACTTACGATGCTGTATTGAAGGCAAATCATTCTTGGCTCAGTTAAGTGGTGAGACCAGTGTCATGGTGTACTCTATTCCTTGTTTGGTCTCTCCCTTTGCTTTTGTTTTCTCTTTGCAAGTTCATTTGTTAATGGGATGA 843 0.4069 EKNSKMPGKPDCDDYGGKEYQNIKHDLSSISFSMDKYLAPNPHTEFVGHSVVLTSPYSDAQYGQIFTTYGQQVMINPPLYGMHQARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIRNRKPYLHESRHLHAMRRARGNGGRFLNTKKLENNSSSVTSDEGNNSGANPSANSFNILHRLTTNNENLASSNMVQDMHRVQSFNNGYHNGNCLTALYLSQVKKGLISFNLRCCIEGKSFLAQLSGETSVMVYSIPCLVSPFAFVFSLQVHLLMG 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00123 280 SMART cbf3 93 154 IPR001289 GO:0003700|GO:0006355
Vimu5g00123 280 MobiDBLite consensus disorder prediction 153 180 - -
Vimu5g00123 280 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 96 151 IPR001289 GO:0003700|GO:0006355
Vimu5g00123 280 PRINTS CCAAT-binding transcription factor subunit B signature 128 151 IPR001289 GO:0003700|GO:0006355
Vimu5g00123 280 PRINTS CCAAT-binding transcription factor subunit B signature 97 119 IPR001289 GO:0003700|GO:0006355
Vimu5g00123 280 ProSitePatterns NF-YA/HAP2 subunit signature. 99 119 IPR018362 GO:0003677|GO:0016602
Vimu5g00123 280 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 21 208 IPR001289 GO:0003700|GO:0006355
Vimu5g00123 280 ProSiteProfiles NF-YA/HAP2 family profile. 94 154 IPR001289 GO:0003700|GO:0006355
Vimu5g00123 280 MobiDBLite consensus disorder prediction 146 180 - -
Vimu5g00123 280 Gene3D - 94 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00123 Vimu-Chr5 997727 1002507 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vimu5g00123 CBFB_NFYA 2.7e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00123 5 997727 1002507 Vimu5g00123 5 997727 1002507 ECH