Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00111 ATGGAGTCTGAAGGCGAAGCTGGGGCAAAGCCAGTGACAGCATTGAGTGCCCAAGTGTGCCAGATATGTGGTGATGGTGTTGGGAAGAATGTGGATGGTGAACCATTCATTGCGTGCGATGTTTGTGCTTTCCCTGTATGCAGACCCTGCTATGAGTATGAAAGGAAGGATGGGAATCAGTCTTGTCCCCAGTGCAAAACCCGGTACAAGAGGCACAAAGGGAGTCCTGCAATTCTTGGAGACACGGAAGAGGATGGTGCTGCTATTGATGGTGCCGCTATTGATGGTGCCAGTGACTTTAATTACGATTCAGACACTCAAAACCAAAAGCAGAAGATTTCAGAGCGCATGTTAAGCTGGCAATTGACTTATGCACGAGGAGAGGAGGTCGGTGCACCAAATTATGATAAGGAAGTTTCTCACAACCATATTCCTCTGTTGACCAGTGGACAAGAGGTGTCCGGAGAGTTGTCTGCAGCTTCACCTGAGAGGCTCTCAATGGCATCTCCTGCAGCTGGTGGAGGAAAACGTGTTCATAATATTCCATATTCATCTGATATTAATCAATCTCCTAATGTCAGGGCAGGGGATCCAGGTTTGGGTAATGTTGCATGGAAAGAAAGAGTTGATGGCTGGAAGATGAAGCAAGAAAAGAATGTTGTTCCTATGAGCACCGGCCAAGCTGCTTCTGAGAGAGGAGCTGGAGATATTGATGCTACTACTGATGTGCTTGTGGATGATTCCTTGTTGAACGACGAAGCTAGACAGCCTCTTTCTAGGAAGGTTTCGATTCCATCATCTAGGATAAATCCATATCGTATGGTCATTATGTTGCGGCTGGTTATCCTTTGCATTTTCTTGCATTATCGGATAACGAATCCAGTGCCGAATGCATATCCATTGTGGTTGGTATCAGTTATATGTGAGATTTGGTTTGCCATATCTTGGATATTGGATCAATTCCCCAAGTGGCTTCCTGTCAACCGGGAAACATATCTTGACAGGCTCGCATTGAGGTATGATAGGGAAGGAGAACCTTCACAACTAGCTGCCGTTGACATTTTTGTCAGTACTGTTGATCCATTAAAGGAACCCCCTCTTGTGACTGCCAATACTGTACTGTCTATTCTGGCAGTTGACTACCCTGTGGATAAGGTCTCCTGCTATGTGTCTGATGATGGTGCTGCTATGTTGACTTTTGAAGCCCTTGCCGAGACATCAGAATTTGCGAGGAAATGGGTTCCCTTTTCCAAGAAGTATAGCATTGAACCCCGTGCACCTGAGTGGTACTTTGCACAAAAGATTGACTACTTGAAAGATAAGGTTCATCCATCATTTGTCAAGGATCGTAGAGCAATGAAGGGGCATCTCTTAATAGTACCTTTCAATTATGTTTCACAGAGAGAATATGAGGAATTCAAAGTTCGTATCAATGGACTAGTTGCAAAGGCACAGAAAATTCCCGAAGAAGGATGGGTGATGCAAGATGGTACACCATGGCCTGGAAATAACACCAGAGACCATCCAGGAATGATTCAGGTTTTCTTGGGCCAAAGTGGAGGACTTGACACTGAGGGCAATGAACTTCCCCGTTTAGTCTATGTGTCTCGTGAAAAGCGCCCAGGTTTCCAACATCACAAGAAAGCTGGTGCCATGAATGCACTTGTAAGAGTATCTGCAGTCCTTACTAATGGACCTTTCTTATTGAATCTTGATTGTGATCACTACATAAACAACAGCAAGGCCTTGAGGGAAGCTATGTGCTTTATGATGGATCCCAACCTTGGTAAACATGTTTGTTATGTCCAGTTTCCACAGAGGTTTGATGGTATTGATAGAAATGATCGTTATGCCAATCGTAATACAGTGTTCTTTGATATAAACTTGAGAGGCTTGGATGGCATTCAGGGTCCTGTTTATGTTGGTACTGGATGTGTCTTCAATAGGACAGCTTTATATGGTTATGAACCTCCTCTTAAACCCAAGCACAAAAAGCCTGGGTTGTTATCATCACTTTGTGGTGGAAATCGGAAGAAAAGTTCAAAGTCTAGTAAGAAAGGATCAGACAAGAAAAAATCTGGCAAGAATGTTGACCCAACTGTACCTATTTTCAGTCTAGAGGATATAGAAGAAGGCGTAGAAGGTACTGGATTTGATGATGAGAAATCACTACTTATGTCACAAATGAGCCTTGAGAAAAGGTTTGGTCAGTCTGCAGTTTTTGTAGCCTCAACTCTTATGGAGAATGGTGGTGTTCCTCAGTCTGCTACTCCAGAAACTCTTCTTAAGGAGGCTATTCATGTTATCAGCTGTGGTTATGAGGATAAATCAGAATGGGGATCGGAGATAGGATGGATCTATGGTTCTGTCACAGAAGATATTCTTACCGGATTTAAGATGCATGCCCGCGGTTGGCGGTCAATATACTGCATGCCTAAGCGGGCAGCGTTTAAAGGTTCTGCTCCCATCAATCTTTCCGACCGTCTAAACCAAGTGCTTCGATGGGCTTTAGGTTCCGTGGAAATTCTTTTCAGCAGGCATTGTCCCATCTGGTATGGTTATGGTGGAAGGCTAAAGTGGCTTGAAAGGTTTGCTTATGTGAACACCACAATCTATCCAGTCACAGCCATTCCCCTTCTCATTTATTGTATCTTGCCCGCAGTCTGTCTGCTCACCAACAAGTTCATCATTCCGCAGATCAGTAACCTTGCAAGCATATGGTTCATCTCTCTCTTTCTTTCCATCTTTGCAACCGGAATCCTGGAGATGAGGTGGAGCGGCGTAGGAATCGACGAGTGGTGGAGGAACGAACAGTTCTGGGTCATCGGCGGTGTCTCGGCCCATCTCTTCGCCGTTTTCCAGGGCCTTCTGAAAGTGCTGGCTGGAATTGACACCAACTTCACTGTGACCTCGAAGGCCTCAGATGAAGATGGAGATTTTGCTGAGCTCTACATGTTCAAATGGACCACCCTTTTGATCCCTCCCACAACCCTTCTCATAATAAACATTGTAGGAGTTGTTGCTGGCATCTCCTACGCCATCAACAGTGGCTACCAATCCTGGGGACCCCTCTTTGGGAAGCTTTTCTTTGCATTCTGGGTCATCATCCATCTCTACCCTTTCCTCAAAGGTCTCATGGGCCGCCAGAACAGAACACCAACCATTGTGGTGGTGTGGTCCATTCTGCTTGCATCCATTTTCTCTCTGTTGTGGGTCAGAATTGATCCTTTCACGACAAGGGTCACTGGCCCTGATGTTGAAGAGTGTGGTATTAACTGCTAG 3282 0.4516 MESEGEAGAKPVTALSAQVCQICGDGVGKNVDGEPFIACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPAILGDTEEDGAAIDGAAIDGASDFNYDSDTQNQKQKISERMLSWQLTYARGEEVGAPNYDKEVSHNHIPLLTSGQEVSGELSAASPERLSMASPAAGGGKRVHNIPYSSDINQSPNVRAGDPGLGNVAWKERVDGWKMKQEKNVVPMSTGQAASERGAGDIDATTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIMLRLVILCIFLHYRITNPVPNAYPLWLVSVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALAETSEFARKWVPFSKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKDRRAMKGHLLIVPFNYVSQREYEEFKVRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLLSSLCGGNRKKSSKSSKKGSDKKKSGKNVDPTVPIFSLEDIEEGVEGTGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPETLLKEAIHVISCGYEDKSEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPVTAIPLLIYCILPAVCLLTNKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEECGINC 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00111 1093 FunFam Cellulose synthase 3 94 - -
Vimu5g00111 1093 FunFam Cellulose synthase 482 656 - -
Vimu5g00111 1093 CDD mRING-HC-C4C4_CesA 18 68 - -
Vimu5g00111 1093 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 94 IPR013083 -
Vimu5g00111 1093 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 489 656 IPR029044 -
Vimu5g00111 1093 Pfam Cellulose synthase 352 1086 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu5g00111 1093 SUPERFAMILY Nucleotide-diphospho-sugar transferases 366 895 IPR029044 -
Vimu5g00111 1093 MobiDBLite consensus disorder prediction 663 699 - -
Vimu5g00111 1093 Pfam Zinc-binding RING-finger 10 86 IPR027934 -
Vimu5g00111 1093 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 255 1060 - -
Vimu5g00111 1093 SUPERFAMILY RING/U-box 5 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00111 Vimu-Chr5 902042 907575 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00111 5 902042 907575 Vimu4g02097 4 23281685 23288031 PCT