Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00109 ATGAAAACGCTAACTGTTAACACCGAAGATTCTTTTTCCAGTCTGCTAGAGCTTGCCTCTAACAATGATATTGAAGGTTTTAAGGTTCTTTTAGAGAAGGATCCTTCCTCGATCAACGAGGTTGGATTCTGGTATGGACGTCAAAACGGATCAAAGCAAATTGTTCTTGAGCGCCGCACTCCTTTGATGGTCGCAGCTACTTACGGAAGCAATGATGTTCTCAAGCTTATTCTGATGTGCCCTGAGGCTGATGTGAATTTCGCATGTGGGGCGAATAAAACCACTGCCCTTCACTGTGCTGCTTCTGGTGGTTCTGCCAATGCTGTTGAAACTGTGAAGCTGCTTTTATCCGCAGGTGCTGATGCGAGTTGCATGGATGCCTATGGAAATCGCCCAGTAGATGTGATTGTTGTCCCTCCTAAGCTGCAAGAAATGAAACCTGTGCTTGAGGAGCTTTTATCCGACAGTGCTTCGGACGGGTCTATTGGTGGGTCCATTGGTGAATTATCTGTTCCTGTGTCTGTCAATTCATCCAGCCCTGGTTCCCCTAATGGTTTGCCATACTCTCCGTCAGACTCGCCACCATCTCCTGTGGTGGCAAAGTTTACTGAAGCAGCTATTGGCTCGTTGTCAGAGAAGAAGGAGTATCCCATAGATCCATCTCTGCCTGATATAAAGAACAGCATATACGCCACTGACGAGTTTCGGATGTTTTCTTTCAAGGTTAGGCCTTGTTCCCGGGCCTACTCTCATGATTGGACGGAGTGCCCATTTGTTCACCCCGGAGAGAACGCAAGGAGGAGAGACCCTAGGAAGTTTCATTACAGCTGTGTGCCGTGCCCTGATTTTAGGAAAGGGGCTTGTAGGCGAGGAGACATGTGTGAATATGCTCATGGGGTGTTTGAGTGCTGGCTTCACCCGGCTCAGTATCGGACACGGCTTTGCAAAGATGGTACTAGCTGCAATCGTAGGGTGTGTTTTTTCGCTCACACTGCAGAGGAGCTGCGTCCACTGTATGTATCCACTGGATCTGCTGTTCCTTCACCACGATCATCGGCCTCGGCTCCTAATGTCATGGACATGGCTGCTGCGATGAGCCTTCTGCCGGGTTCGCCTTCGTCTGTCTCTTCCATGTCGCCATCTCACTTTGGGCAACCAATGTCCCCATCTGCCAATGGCATGTCACTTTCCTCTGGTGCCTGGGCACAGCCGAACGTGCCTGCACTTCATTTACCAGGAAGCAATCTTCAATCTAGCCGATTGAGGTCTTCCCTTAGTGCACGCGACATTCCACCCGAAGACTTGAACGGAATGCTTGATCTTGATGGCCACCAGCATCCTTTGAATGACTTGAGCTGTTACTTACAGCCTCGCCCTGGTGCTGGTTCTGTGAGTCGATCTGGTCGGTCCAAGACCCTAACTCCAGCAAATCTGGAAGAGCTCTTTTCTGCTGAAATTTCATCGTCTCCCCGGTATTCGGATCCAGCAGCGGCGTCTGTGTTTTCTCCAACCCACAAATCAGCTGTTCTCAATCAGTTTCAACAGCTACAGAGCATGTTATCACCAATTAATACTAATTTACTTTCTCCTAAGAGCGTTGACCATCCTCTTTTACAGGCCTCCTTTGGCGTCTCTTCGTCTGGAAGGATGTCACCAAGAAGTGTGGAACCAATCTCACCGATGAGCACACGCATTTCGGCGTTTGCTCAGCGTGAGAAACAGCAGCAGCAGCAGCTACAGCTGCGAAGTGTCAGTTCAAGGGACCTTGGTGCCAACAGTCCTGCCTCAATTGTTGGCTCCCCTGTAAACGCTTGGTCCAAGTGGGGATCTCCTAATGGAAAAGCTGATTGGTCAGTAAACGGAGACGAGCTTGGTGGTAAGATGCGAAGGTCATCCTCGTTCGAGCTTAAGCACAATGGTGAAGAGCCTGATCTGTCATGGGTCCAGTCTCTGGTGAAGGAATCCCCACCTGAGATGATGAAAGAGAAGTTTGCTTCTCCTCTGCCCACAGCACCATCAGCGGATGGACCAAATTCTAATCCCCAAATTGAATCCATTGATCATTCCGTTTTAGGAGCCTGGCTTGAGCAAATGCAACTGGATCAGCTTGTAGTCTAG 2118 0.4948 MKTLTVNTEDSFSSLLELASNNDIEGFKVLLEKDPSSINEVGFWYGRQNGSKQIVLERRTPLMVAATYGSNDVLKLILMCPEADVNFACGANKTTALHCAASGGSANAVETVKLLLSAGADASCMDAYGNRPVDVIVVPPKLQEMKPVLEELLSDSASDGSIGGSIGELSVPVSVNSSSPGSPNGLPYSPSDSPPSPVVAKFTEAAIGSLSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAPNVMDMAAAMSLLPGSPSSVSSMSPSHFGQPMSPSANGMSLSSGAWAQPNVPALHLPGSNLQSSRLRSSLSARDIPPEDLNGMLDLDGHQHPLNDLSCYLQPRPGAGSVSRSGRSKTLTPANLEELFSAEISSSPRYSDPAAASVFSPTHKSAVLNQFQQLQSMLSPINTNLLSPKSVDHPLLQASFGVSSSGRMSPRSVEPISPMSTRISAFAQREKQQQQQLQLRSVSSRDLGANSPASIVGSPVNAWSKWGSPNGKADWSVNGDELGGKMRRSSSFELKHNGEEPDLSWVQSLVKESPPEMMKEKFASPLPTAPSADGPNSNPQIESIDHSVLGAWLEQMQLDQLVV 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00109 705 Pfam Ankyrin repeats (3 copies) 19 124 IPR002110 GO:0005515
Vimu5g00109 705 Gene3D - 3 156 IPR036770 -
Vimu5g00109 705 PANTHER UNKEMPT FAMILY MEMBER 17 655 IPR045234 -
Vimu5g00109 705 MobiDBLite consensus disorder prediction 656 685 - -
Vimu5g00109 705 SMART ANK_2a 92 124 IPR002110 GO:0005515
Vimu5g00109 705 SMART ANK_2a 10 40 IPR002110 GO:0005515
Vimu5g00109 705 SMART ANK_2a 57 87 IPR002110 GO:0005515
Vimu5g00109 705 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Vimu5g00109 705 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Vimu5g00109 705 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Vimu5g00109 705 FunFam Zinc finger CCCH domain-containing protein 66 232 300 - -
Vimu5g00109 705 SUPERFAMILY Ankyrin repeat 10 137 IPR036770 -
Vimu5g00109 705 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Vimu5g00109 705 MobiDBLite consensus disorder prediction 173 195 - -
Vimu5g00109 705 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Vimu5g00109 705 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
Vimu5g00109 705 MobiDBLite consensus disorder prediction 376 396 - -
Vimu5g00109 705 Gene3D - 274 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00109 Vimu-Chr5 860315 862432 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu5g00109 Ank_2 2.3e-09 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02098 4 23304376 23309318 Vimu5g00109 5 860315 862432 ECH
Vimu5g00109 5 860315 862432 Vimu5g00109 5 860315 862432 ECH
Vimu5g00109 5 860315 862432 Vimu4g02098 4 23304376 23309318 PCT