Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00105 ATGGAAGAGAATGGTAGTTCCAATGAACCAAACAACAACTCAAAGTGGCCTCTCTTCATTTTCTTCAAAGGTGCAAGGCATGTTTTCAAGCTGGATGCACTTTCTCGGGAGATATTAGGGATTGCCTTTCCCTCAGCACTAGCCGTTGCTGCTGATCCAATTGTTTCTCTAATTGACACAGCTTTCATAGGCCAATTAGGGCCTGTGGAACTTGCTGCTGCAGGAGTTTCCATTTCTTTGCTGAACCAAGCTTCAAGAATCACCATTTTTCCTCTTGTGAGCATCACCACTTCATTTGTGGCTGAGGAAGATACTCTTGAAAAGCTGAATGCTCAAAATGGTAACAAATCAAAGCTCAAAGAAGTGACTATGCCAGAAGATCAGATGCTTCAAGACTTGGAAAAAGATACCCTCAAAGAGAATATTAACACTTCACCAAAACCTGTCATTGAAAAATCTGAATCAAAGGATCTCGAAGTGAATAGTTTTGGATCCCAAGCTGTGGAAAATTATAATGCTACAAGGTACACCGACACAGAAACCAACAAAAGTATCTGCAAGTCTTCATGGATTACTAAGAGTAAGAAGAAAGTTGTAAAGAAGAAGAGACGTATTGCTTCAGCATCAACAGCACTACTTTTTGGCACCATCCTTGGTCTTATTCAAACTGCTGTTCTTATATTTGCAGCCAAACCTCTCTTACGTGTTATGGGTCTGAAACCAGATTCTCCAATGCTAAATCCAGCAGAAAAGTACTTAAAACTGAGATCCATTGGAGCACCTGCAGTGCTTCTCTCCTTGGCCATGCAAGGAATCTTTAGAGGGTTTAAGGATACAAAAACTCCATTATATGTCATTGTTTCGGGATCTACATTGAATGTCATCTTGGACCCAATTCTTATTTTCACATTGAAATTAGGCATCAAAGGTGCAGCCATTTCACATGTTCTTTCTCAGTACATGATGGCAATCACTCTCTTACTGATATTAATGAGAAAAGTGCATCTCCTACCTCCAAGCATAAAGGATTTACAGATTTTCAGATTTCTTAAAAATGGAGGTTTGTTGATGCTGAGGGTGATAGCAGTGACATTTTGTGTTACCTTGGCAGCGTCATTAGCAGCAAGGCTTGGTTCAATTCCCATGGCTGCATTTCAGACATGCCTGCAAGTCTGGTTGACATCATCTCTTCTTGCAGATGGTTTAGCTGTTGCTGTTCAGGCAATTCTAGCTTGTGCTTTTGCTGAAAAGGACTATAAGAAAACAACAGCAGCTGCAATAAGAACACTGCAAATGAGTTTTGTTTTAGGAACTGGTCTCTCTCTTGCTGTTGGACTTGGATTATACTTTGGAGCTGGAATATTCTCCAAAAATATTCATGTTGTGCACTTAATTAAAATAGGCCTCCCGTTTGTGGCTGCTACTCAACCAATCAATTCTTTAGCCTTTGTGTTTGATGGAGTCAACTATGGAGCTTCTGATTTTGCATACTCAGCATGCTCTCTGGATGGGAACTGGGACAGGACCATGGCGCTATCTCAGAGGTTGTTCATTGACTTAGCACATATTGTGTAA 1575 0.4057 MEENGSSNEPNNNSKWPLFIFFKGARHVFKLDALSREILGIAFPSALAVAADPIVSLIDTAFIGQLGPVELAAAGVSISLLNQASRITIFPLVSITTSFVAEEDTLEKLNAQNGNKSKLKEVTMPEDQMLQDLEKDTLKENINTSPKPVIEKSESKDLEVNSFGSQAVENYNATRYTDTETNKSICKSSWITKSKKKVVKKKRRIASASTALLFGTILGLIQTAVLIFAAKPLLRVMGLKPDSPMLNPAEKYLKLRSIGAPAVLLSLAMQGIFRGFKDTKTPLYVIVSGSTLNVILDPILIFTLKLGIKGAAISHVLSQYMMAITLLLILMRKVHLLPPSIKDLQIFRFLKNGGLLMLRVIAVTFCVTLAASLAARLGSIPMAAFQTCLQVWLTSSLLADGLAVAVQAILACAFAEKDYKKTTAAAIRTLQMSFVLGTGLSLAVGLGLYFGAGIFSKNIHVVHLIKIGLPFVAATQPINSLAFVFDGVNYGASDFAYSACSLDGNWDRTMALSQRLFIDLAHIV 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00105 524 NCBIfam MATE family efflux transporter 44 501 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu5g00105 524 Pfam MatE 357 498 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu5g00105 524 Pfam MatE 207 299 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu5g00105 524 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 5 502 IPR044644 -
Vimu5g00105 524 CDD MATE_DinF_like 36 502 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00105 Vimu-Chr5 834618 839291 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00471 4 3399378 3404250 Vimu5g00105 5 834618 839291 ECH
Vimu5g00105 5 834618 839291 Vimu5g00105 5 834618 839291 ECH