Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00081 ATGCAGCTTCTCAGTGAAATTATTCCTTGCTTAACCAAAAGTGAATCAAGAACTTGTGAGAAGCAGGAAAGTGAGAGAACCATAACAATGCTCTACAACTACTTGTGGAGTGAGGCTAGAAAGAAAAGGGACATGAAACTGGTTGTGGAGGTTATTAATGCTCATGATCTTATGCCAAAAGATGGTGAAGGATCAGCCAGTCCCTTTGTGGAAGTAGACTTTGAAAACCAGCTTAGCAGAACCAGAACTGTGCCAAAGAACCTCAACCCCACCTGGAACCAAAAACTACTCTTCCATTTGGATGCAACCAAACCTTACCATCGCCAAACTATTGAAGTATCAGTCTACAACGAGAGGAGACTCACTCCAGGCAGAAACTTCCTTGGAAGGGTGAGAATTCCTTGCTCCAACATTGTCAAGGAAGGTGAAGAAGTGTATCAGATTTTCCCACTTGAAAAGAAATGGTTTCTGTCTCCTGTTAAGGGTGAGATTGGCCTCAAAATATACCTTGCATCAGAGTTAACAAACTCCAAACCAAAACCTCTTTCTCCTGTTTTCCTCTCAGAACAAGAAAAACTCCCACCTTCTACTCCACTCCAACCACCAGAATCAACAACTAGTACTACCCTTCCTCCTCCTCTTATTACTCCTTCAGACAGAACAACATCAGAAGCTGATTCCATTGAAGAACTTCCTACATTTGACACCCCAAAATCAAGTATAGAAGAAGCAGAAGTATATTCTGATGCACAAGTTCGGTCTGGTGGCGTTGGTATCGATCCAGATCCAAAGAAAGAAAGCAGAGAAGCTGTGCCAGAGACAACTCAACAACTAGACAAGCATCAAGTTCTCCAGCCACAGACGATTTCAATAAAGAGAAGACCACCAGGTACTCCATCTGCCATGCATTCAGTTGATCCTCAAGTCCAATCTAGTCATCATGAAAACTATAACCACAGTGACACCAATCCACAGCCTAGGATTTCAGTAAAGAGGCGACCTCAAGCACAAGGTACTCCTTTCACCATGCACTCGGTTGATCCACAAGTCCAACCAAGCCACGGTGAAGGCTACAATCACAATGACACCCACCAGAAGCCAAGAATTTCAATTAAAAGACGACCACGAGGACCCTTTAGTCCACAAGTCCGTGCGAGCCATGATGAAGCCTACAACCTCATGGGAACCAATCCACAGCAGCCAAGAATTTTAGTAGAGAGGCAACCGCAGAATACTCCACTCACCACGCACCAAGTTAGTCATACTAGCCACGATGAAAACTACAGTCCCAATGACACCAACGCACGTCTAGGAGAAAGGTGGCCAAGTGAGGGAGCTTATGGCAGAAGAGGGTGGATGAGTGGTAGTGACAGATTCAGTAGTACATTTGATCTTGTTGAGCAGATGTATTATCTGTATGTTCGTGTTGTGAAGGCGAAAGATCTTCCTCCGAGCACCATCACCTCAAGCTGTGATCCTTATGTGGAAGTGAAGCTGGGGAACTACAAGGGAAGAACAAAGCACTTTGATCGGAAATTGAACCCGGAGTGGAACCAAGTGTTTGCTTTCTCCAAAGACCGCATTCAGTCTTCTGTTTTAGAAGTCTTCGTGAAAGATAAAGCAATGATGGGGAGAGATGAGTATATTGGAAGGGTGGTTTTTGACCTCAATGAGGTTCCAACAAGAGTTCCACCAGATAGTCCACTAGCTCCTCAGTGGTATCGGCTTGACGACTGGCGCGAAGAAGGCAAGGTGAGGGGTGACATTATGCTTGCAGTTTGGATGGGAACACAAGCTGATGAGGCTTTCTCTGATGCTTGGCATTCTGATGCTGCCACTGTCTATGGTGAGGGTGTTTTCAACATCAGATCAAAGGTTTACATGTCACCAAAACTGTGGTATCTCAGAGTGAATGTCATTGAAGCTCAAGATGTGATACCGGGTGACAGAAACAGACTACCTGAGGTTTTTGTGAAAGCTCAAGTGGGGTGCCAAGTACTAACAACCAAGATATGCCCCACCAGAACAACCACCCCATTTTGGAATGAAGATTTGATTTTTGTAGCCTGTGAGCCATTTGAGGAGCAACTAACAATCACTGTGGAGGATCGTGTGCACCCTTCAAAAGATGAGGTACTTGGGAAGATAATCCTACCAATGAACCTCTTTGAGAAGCGCCTAGACCAAAGGCCGGTTCATTCCCGCTGGTTCAGTCTGGAGAAATTTGGTTTTGGAATGTTAGAAGGTGATAGAAGAAATGAGCACAAGTTTTCAAGCAGGATTCACATGAGAGTTTGCCTTGAAGGTGGATACCATGTTCTGGATGAGTCCACATTGTACAGCAGTGATCAAAGGCCAACAGCGAGACAACTATGGAAGCAACCAATTGGGATACTTGAAGTAGGCATCTTAGGAGCTCAAGGGCTTCTCCCAATGAAGATGAGGGATGGCAGAGGCAGCACTGATGCATACTGTGTTGCCAAGTATGGTCAGAAATGGGTCAGAACCAGAACACTGCTTGACACTTTCAGTCCTAAATGGAATGAGCAATACACATGGGAGGTTTATGATCCTTGCACTGTGATAACATTGGGAGTTTTTGACAACTGCCATTTAGGTGGAGAAAAAGCTACAGGAAGGGATTCTCGTATTGGAAAGGTAAGAATAAGGCTATCAACACTTGAAGCTAATAGAACTTACACCAATTCTCACCCTCTTCTTGTTCTACACCCACATGGGGTTAAGAAGATGGGAGAGCTTCAGTTAGCAGTGAGGTTCACAGCACTCTCACTGGCTAACATAGTTCATATCTACGGCCAACCTTTGCTTCCCAAGATTCATTACTTACACCCTTTCACAGTTAACCAAATAGACAACCTAAGGTACCAAGCAATGAACATTGTGGCTGAAAGGCTAGGCAGAGCCGAACCCCCACTCCGGAAGGAGGTGGTGGAGTACATGCTGGATGTTGATTCCCATATGTGGAGCATGAGAAGAAGCAAGGCTAACTTCTTCCGCATCATGTCACTTTTCTCTGGTATGATCAAAATGGGAAAGTGGTTCAGTGATGTTTGCCTCTGGAAGAACCATGTTACATCAATCCTAGTTCACATTCTCTTCCTTATACTGATATGGTACCCGGAATTGATCCTACCAACTGTGTTTCTATACATGTTCCTGATTGGTCTGTGGAACTACAGGTTCCGGCCAAGACACCCTCCTCACATGGATCCTAAACTCTCCTGGGCCGAAGCTGTTCATCCTGACGAACTAGATGAAGAGTTTGACACATTTCCAACTTCAAGATCACAAGATGTTGTGAGAATGAGGTATGACAGGCTTAGGACTGTGGCAGGTAGGATTCAGACAGTTGTTGGGGACATAGCCACACAAGGGGAGAGGTTTCAGTCTCTACTGAGTTGGAGAGACCCCAGAGCAACCAGCCTCTTTGTAGTGTTCAGCTTTTGTGCTGCTGTGACTCTCTATGCAACACCATTCAGAGTGGTGGCTCTGGTTACGGGCTTGTACTTTTTGAGACATCCAAGGTTTAGGAGCAAGATGCCTTCAGTACCAAGTAATTTCTTCAAGAGGCTCCCAGCTAGAACAGATAGTTTATTGTGA 3621 0.4502 MQLLSEIIPCLTKSESRTCEKQESERTITMLYNYLWSEARKKRDMKLVVEVINAHDLMPKDGEGSASPFVEVDFENQLSRTRTVPKNLNPTWNQKLLFHLDATKPYHRQTIEVSVYNERRLTPGRNFLGRVRIPCSNIVKEGEEVYQIFPLEKKWFLSPVKGEIGLKIYLASELTNSKPKPLSPVFLSEQEKLPPSTPLQPPESTTSTTLPPPLITPSDRTTSEADSIEELPTFDTPKSSIEEAEVYSDAQVRSGGVGIDPDPKKESREAVPETTQQLDKHQVLQPQTISIKRRPPGTPSAMHSVDPQVQSSHHENYNHSDTNPQPRISVKRRPQAQGTPFTMHSVDPQVQPSHGEGYNHNDTHQKPRISIKRRPRGPFSPQVRASHDEAYNLMGTNPQQPRILVERQPQNTPLTTHQVSHTSHDENYSPNDTNARLGERWPSEGAYGRRGWMSGSDRFSSTFDLVEQMYYLYVRVVKAKDLPPSTITSSCDPYVEVKLGNYKGRTKHFDRKLNPEWNQVFAFSKDRIQSSVLEVFVKDKAMMGRDEYIGRVVFDLNEVPTRVPPDSPLAPQWYRLDDWREEGKVRGDIMLAVWMGTQADEAFSDAWHSDAATVYGEGVFNIRSKVYMSPKLWYLRVNVIEAQDVIPGDRNRLPEVFVKAQVGCQVLTTKICPTRTTTPFWNEDLIFVACEPFEEQLTITVEDRVHPSKDEVLGKIILPMNLFEKRLDQRPVHSRWFSLEKFGFGMLEGDRRNEHKFSSRIHMRVCLEGGYHVLDESTLYSSDQRPTARQLWKQPIGILEVGILGAQGLLPMKMRDGRGSTDAYCVAKYGQKWVRTRTLLDTFSPKWNEQYTWEVYDPCTVITLGVFDNCHLGGEKATGRDSRIGKVRIRLSTLEANRTYTNSHPLLVLHPHGVKKMGELQLAVRFTALSLANIVHIYGQPLLPKIHYLHPFTVNQIDNLRYQAMNIVAERLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMSLFSGMIKMGKWFSDVCLWKNHVTSILVHILFLILIWYPELILPTVFLYMFLIGLWNYRFRPRHPPHMDPKLSWAEAVHPDELDEEFDTFPTSRSQDVVRMRYDRLRTVAGRIQTVVGDIATQGERFQSLLSWRDPRATSLFVVFSFCAAVTLYATPFRVVALVTGLYFLRHPRFRSKMPSVPSNFFKRLPARTDSLL 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00081 1206 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 470 610 IPR035892 -
Vimu5g00081 1206 CDD C2B_MCTP_PRT_plant 471 597 IPR047257 -
Vimu5g00081 1206 ProSiteProfiles C2 domain profile. 616 737 IPR000008 -
Vimu5g00081 1206 FunFam C2 domain-containing protein 780 930 - -
Vimu5g00081 1206 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 797 928 IPR035892 -
Vimu5g00081 1206 MobiDBLite consensus disorder prediction 191 380 - -
Vimu5g00081 1206 ProSiteProfiles C2 domain profile. 453 574 IPR000008 -
Vimu5g00081 1206 FunFam C2 domain-containing protein 466 612 - -
Vimu5g00081 1206 MobiDBLite consensus disorder prediction 276 294 - -
Vimu5g00081 1206 Gene3D C2 domain 772 927 IPR035892 -
Vimu5g00081 1206 MobiDBLite consensus disorder prediction 303 358 - -
Vimu5g00081 1206 Gene3D C2 domain 621 766 IPR035892 -
Vimu5g00081 1206 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 46 1206 IPR047259 -
Vimu5g00081 1206 Pfam Plant phosphoribosyltransferase C-terminal 1051 1206 IPR013583 -
Vimu5g00081 1206 CDD C2C_MCTP_PRT_plant 634 786 IPR047258 -
Vimu5g00081 1206 Pfam C2 domain 797 906 IPR000008 -
Vimu5g00081 1206 Pfam C2 domain 46 150 IPR000008 -
Vimu5g00081 1206 Pfam C2 domain 633 739 IPR000008 -
Vimu5g00081 1206 Pfam C2 domain 471 574 IPR000008 -
Vimu5g00081 1206 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 46 173 IPR035892 -
Vimu5g00081 1206 CDD C2D_MCTP_PRT_plant 798 923 IPR047255 -
Vimu5g00081 1206 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 633 788 IPR035892 -
Vimu5g00081 1206 CDD C2A_MCTP_PRT_plant 46 172 - -
Vimu5g00081 1206 ProSiteProfiles C2 domain profile. 22 149 IPR000008 -
Vimu5g00081 1206 FunFam C2 domain-containing protein 620 767 - -
Vimu5g00081 1206 MobiDBLite consensus disorder prediction 414 436 - -
Vimu5g00081 1206 ProSiteProfiles C2 domain profile. 780 904 IPR000008 -
Vimu5g00081 1206 MobiDBLite consensus disorder prediction 414 440 - -
Vimu5g00081 1206 Gene3D C2 domain 466 613 IPR035892 -
Vimu5g00081 1206 Gene3D C2 domain 40 184 IPR035892 -
Vimu5g00081 1206 MobiDBLite consensus disorder prediction 259 275 - -
Vimu5g00081 1206 SMART C2_3c 798 903 IPR000008 -
Vimu5g00081 1206 SMART C2_3c 471 568 IPR000008 -
Vimu5g00081 1206 SMART C2_3c 634 734 IPR000008 -
Vimu5g00081 1206 SMART C2_3c 46 147 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00081 Vimu-Chr5 604726 608431 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00081 5 604726 608431 Vimu5g00081 5 604726 608431 ECH