Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02100 ATGGACGAGAATGGTAGCTCAAGTAATGAACCCAAGAACAACAACAGAAACCTGCCTGTCTCAGTTTTCTTCAAAGATGCAAGACATGTTTTCAAGATGGACTCCATTGCTAAGGAGATACTTGGGATTGCATTCCCATCTGCACTTGCTGTTGCTGCTGATCCTATTGCTTCTCTCATAGACACAGCATTCATTGGCCACTTGGGTCCCGTGGAGCTTGCTGCAGCAGGAGTGTCCATCGCTTTGTTCAACCAAGCTTCAAGAATTACCATCTTCCCTTTGGTTAGCATCACAACTTCCTTTGTGGCTGAGGAAAATACCATCGAAAAAATCAACAAAGAAAAGAATTTGACTGAAAACATTAAGGCCAAGTCCAAGGAGGTAAGGCCGGAGGATCAGTTGATTCAAGATATAGAGAAAGGAGCATCCAAGGAAGACAATGAGACTCCAACAGAATCTTCATCTTCAACAAGTGAGAATATGGAAATGAATGACTGCAATACTAGTGTAAGCAAATCTACCTCTGCTGGAAGTAGTAGTAACAAGAGTGTGTCAAAACCTGGAAGGAAGAAGCGACACGTTGCTTCTGCATCAACAGCGCTACTTTTTGGCACAATCCTTGGCCTTCTTCAAGCTGCAACCCTTATATTTGCAGCCAAACCTCTATTAGCTGCAATGGGTCTGAAACTTGATTCTCCTATGCTAAATCCAGCTGTTAAATACTTGAGACTGAGAGCTTTAGGTGCTCCTGCAGTTCTTCTCTCCTTGGCCATGCAAGGAATCTTTCGAGGATTCAAGGACACTACAACTCCTTTATATGTTATTGTCTCGGGGTATGCATTGAATGTGGCTTTGGATCCAATTCTTATCTTCTACTGCAAACTGGGCATCAAAGGTGCAGCCATTTCACATGTGCTCTCTCAGTATGTGATGGCATTCGCCCTCTTGTTGATATTAACTAGAAAAGTGGATCTTGTACCTCCAAGCATCAAGGACTTGCAGATATTCAGGTTTCTTAAAAATGGAGGTCTTCTGTTGGCAAGAGTTGTGGCAGTGACATTCTGCCAAACCCTGGCAGCCTCATTGGCAGCAAGATTTGGCCCAATTCCTATGGCTGCTTTCCAAACCTGCTTGCAGGTGTGGCTGACATCTTCCCTTCTTGCTGATGGTTTAGCTGTTGCTGTACAGGCAATTCTAGCTTGTTCATTTGCTGAGAAAGATTATGAAAAGGTGATTGCTGCTGCAACAAGAACGCTTCAGATGAGTTTTGTTTTAGGAGTTGGACTCTCTCTTGCAGTTGGAGTTGGTTTATACTTTGGAGCTGGAATCTTCTCCAAAAGTGTTCTTGTTGTGCACTTAATCAGAATAGGACTCCCGTTTGTTGCTGCAACACAACCAATAAACTCATTAGCCTTTGTGTTTGATGGTGTGAACTATGGAGCTTCTGATTTTGCATATTCTGCATACTCCTTGGTGACTGTGTCATTAGCAAGTGTTGCTTCACTTTTCCTTCTCTCTAAGAGCAAAGGTTTTGTTGGACTATGGATTGCACTAACCATATATATGAGTCTTCGCATGTTTGCTGGTGTATGGAGGATGGGAACAGGAACAGGACCATGGCGTTTTCTGAGAGGACGACATTGA 1644 0.4325 MDENGSSSNEPKNNNRNLPVSVFFKDARHVFKMDSIAKEILGIAFPSALAVAADPIASLIDTAFIGHLGPVELAAAGVSIALFNQASRITIFPLVSITTSFVAEENTIEKINKEKNLTENIKAKSKEVRPEDQLIQDIEKGASKEDNETPTESSSSTSENMEMNDCNTSVSKSTSAGSSSNKSVSKPGRKKRHVASASTALLFGTILGLLQAATLIFAAKPLLAAMGLKLDSPMLNPAVKYLRLRALGAPAVLLSLAMQGIFRGFKDTTTPLYVIVSGYALNVALDPILIFYCKLGIKGAAISHVLSQYVMAFALLLILTRKVDLVPPSIKDLQIFRFLKNGGLLLARVVAVTFCQTLAASLAARFGPIPMAAFQTCLQVWLTSSLLADGLAVAVQAILACSFAEKDYEKVIAAATRTLQMSFVLGVGLSLAVGVGLYFGAGIFSKSVLVVHLIRIGLPFVAATQPINSLAFVFDGVNYGASDFAYSAYSLVTVSLASVASLFLLSKSKGFVGLWIALTIYMSLRMFAGVWRMGTGTGPWRFLRGRH 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02100 547 MobiDBLite consensus disorder prediction 122 147 - -
Vimu4g02100 547 MobiDBLite consensus disorder prediction 148 184 - -
Vimu4g02100 547 NCBIfam MATE family efflux transporter 46 515 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu4g02100 547 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 6 545 IPR044644 -
Vimu4g02100 547 MobiDBLite consensus disorder prediction 122 191 - -
Vimu4g02100 547 CDD MATE_DinF_like 38 535 IPR044644 -
Vimu4g02100 547 Pfam MatE 349 496 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu4g02100 547 Pfam MatE 189 288 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02100 Vimu-Chr4 23315422 23319877 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02100 4 23315422 23319877 Vimu5g00107 5 848350 850261 ECH
Vimu4g02100 4 23315422 23319877 Vimu4g02100 4 23315422 23319877 ECH
Vimu5g00107 5 848350 850261 Vimu4g02100 4 23315422 23319877 PCT