Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02098 ATGTGCCGTGGTCCAGAGAAATCAAAATCTCTATCAACTCCGTCTTCATCTGCTGTAGAAGGTTCAACTAGAGCCGAAGACATGAAAGATCTAACTGTTTGTGCTGAAGATTCTTTTTCCTGCCTACTCGAGCTTGCTTCTAACAATGATTTTGAAGATTTCAAGCTAGCTTTAGATAGCGATATTTCTCTAATAAACAAAGTTGGCCTCTGGTATGTCCGTCAGATTGGATCCAAACAAATTGTTTTGGAGCACCGAACTCCTTTAATGGTTGCTTCAATGTATGGGAGTGTGGATGTTCTAAAACTTATACTCTCGTGTCCCGAGGTTGATGTCAATTTCTCCTGCGGGACAGATAGAAGCACTGCCCTTCATTGTGCTGCATCAAGTGGTTCTTTGAATGCAATTGATGTTGTGAAATTGCTCTTGTCATCTGGTGCTGACATCAGATCTGTGGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTCAAAGGTCTTAAAGCATCTCTTGAAGATCTACTTTCAGATAGTGGTTGTGATGGGTCTGTTGGTGACTGTTTTATTCCGCTGGCAGTTAATTCACCATGTTCGGATTCAGCGACTCATTTTTTATCACCTGAAAATGGGTTGCCATCCTCTCCTATGGCGTCCAAGTTTACTGATACTACGACTAATTCTGCCACCGAGAAGAAAGAATATCCAACTGACCCATCACTTCCTGATATAAAGAACAGCATATATGCTACAGATGAGTTTCGCATGTTTTCATTCAAGGTGCGACCCTGTTCCCGTGCATACTCTCATGATTGGACTGAATGTCCTTTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGACCCCAGAAAATTCCATTACAGTTGTGTGCCATGCCCTGAGTTTAGAAAGGGGGCTTGTAGACGCGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGTTGGCTACACCCTGCCCAATATCGGACAAGGCTGTGCAAAGATGGTGTTAGTTGTAATAGAAGGGTTTGTTTTTTTGCCCACACAGCAGAAGAGCTGCGTCCATTGTACGTGTCCACTGGATCCGCTGTTCCTTCACCCCGTTCTTCTGCTTCTACTCCTAACGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGTTCACCATCGTCACTTTCTGGCATGTCTCCATCTCCCTTCGCTCAGCAAATGTCTCCATCTACAGGTGGCATTCCTCACTCATCTTCTGCTTGGCCGCAGCCAAACGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGTCGACTAAGGTCTTCTCTTAATGCTCGTGACATGCCACCTGAAGACTTGGATGTGTTGCAAGATTTTGATGGTCAGCAACACCTTTTGAATGACTTGAGCTGTTTCTCTCAGCCCCGTCCTGGTGCCATTTCAGTTAGTCGATCTGGTCGGTCTAAGACACTAACTCCATCAAATCTTGATGATCTATTTTCTGCTGAAATTTCATCTCCTAGGTATTCTGACCCAGCAGCGGCTTGTGTATTTTCCCCAACACACAAATCAGCTGTTTTTAACCAGTTTCAACAACTTCAAAGTTCCTTATCACCCATAAATACGAGTGTCTCGTCTCCTAGGAATGTTGAGCATACTCTTTTACAGGCTTCATTTGGTGTCTCTTCCCCGGGAAGGATGTCACCAAGAAGTTTGGAACCAATCTCTCCAATGAGCGCCCGATTATCTGCACTTGCGCAGCGTGACAAGCAGCAGCTGCGGAGTCTTAGTTCAAGGGATCTTGGTGCCCACAATCCTGTCTCAATTGTTGGGTCCCCAGGTAACTCCTGGTCTAATTGGGGTTCTCCTCATGGGAATGGAAAGGTAGATTGGTCGGTAAATGGAAATGAGCTAGGTCGATTGCAAAGGTCATCCTCATTTGAGCTTGGAAACAACGGGGAGGAGCCTGATCTGTCCTGGGTTCAATCCCTCGTGAAGGAATCGCCATCCGAGATTAAAGAGAAGTTGGTAGGTTCTGGTGGCCCTGTTGTATCTGCAGATGGGCAGAATTCCAATCCTCAAGTTGAGTCTATTGATCACTCTGTTCTAGGAGCATGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA 2169 0.4527 MCRGPEKSKSLSTPSSSAVEGSTRAEDMKDLTVCAEDSFSCLLELASNNDFEDFKLALDSDISLINKVGLWYVRQIGSKQIVLEHRTPLMVASMYGSVDVLKLILSCPEVDVNFSCGTDRSTALHCAASSGSLNAIDVVKLLLSSGADIRSVDANGNRPVDVIVVPPKLKGLKASLEDLLSDSGCDGSVGDCFIPLAVNSPCSDSATHFLSPENGLPSSPMASKFTDTTTNSATEKKEYPTDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGVSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASTPNVMDMAAAMSLFPGSPSSLSGMSPSPFAQQMSPSTGGIPHSSSAWPQPNVPALHLPGSNIQTSRLRSSLNARDMPPEDLDVLQDFDGQQHLLNDLSCFSQPRPGAISVSRSGRSKTLTPSNLDDLFSAEISSPRYSDPAAACVFSPTHKSAVFNQFQQLQSSLSPINTSVSSPRNVEHTLLQASFGVSSPGRMSPRSLEPISPMSARLSALAQRDKQQLRSLSSRDLGAHNPVSIVGSPGNSWSNWGSPHGNGKVDWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPSEIKEKLVGSGGPVVSADGQNSNPQVESIDHSVLGAWLEQMQLDQLVV 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02098 722 MobiDBLite consensus disorder prediction 399 425 - -
Vimu4g02098 722 MobiDBLite consensus disorder prediction 213 241 - -
Vimu4g02098 722 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Vimu4g02098 722 SUPERFAMILY Ankyrin repeat 30 163 IPR036770 -
Vimu4g02098 722 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Vimu4g02098 722 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Vimu4g02098 722 PRINTS Ankyrin repeat signature 120 135 IPR002110 GO:0005515
Vimu4g02098 722 PRINTS Ankyrin repeat signature 138 152 IPR002110 GO:0005515
Vimu4g02098 722 SMART ANK_2a 84 114 IPR002110 GO:0005515
Vimu4g02098 722 SMART ANK_2a 119 151 IPR002110 GO:0005515
Vimu4g02098 722 MobiDBLite consensus disorder prediction 1 24 - -
Vimu4g02098 722 Pfam CCCH-type zinc finger 302 322 IPR041367 -
Vimu4g02098 722 Pfam Ankyrin repeats (3 copies) 69 151 IPR002110 GO:0005515
Vimu4g02098 722 Gene3D - 298 360 - -
Vimu4g02098 722 Gene3D - 26 176 IPR036770 -
Vimu4g02098 722 PANTHER UNKEMPT FAMILY MEMBER 44 673 IPR045234 -
Vimu4g02098 722 MobiDBLite consensus disorder prediction 8 22 - -
Vimu4g02098 722 FunFam Zinc finger CCCH domain-containing protein 66 255 323 - -
Vimu4g02098 722 MobiDBLite consensus disorder prediction 213 238 - -
Vimu4g02098 722 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
Vimu4g02098 722 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02098 Vimu-Chr4 23304376 23309318 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu4g02098 Ank_2 5.4e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02098 4 23304376 23309318 Vimu5g00109 5 860315 862432 ECH
Vimu4g02098 4 23304376 23309318 Vimu4g02098 4 23304376 23309318 ECH
Vimu5g00109 5 860315 862432 Vimu4g02098 4 23304376 23309318 PCT