Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02092 ATGTCTCAAAAAAGTGTTGTAGTTCTTTCAGTTTTCATTACCATGATTGTCTCATCTGGGGTGTGTTTTGCGTCTTTCCTAGAAGACACATATCATTTAACCAATTATCAGCATTACTCTGTCAAACCAAACAATGAACATTTTGGTAACATCATGAGAAGGGCTTATGGATCCAATCCTTCTGCAAGGTCTCAGACAATGATCAGTGTTGATGACCATGGAGCCAAAGCTAATGATGGAAGAGATGACACTAAGGCATTTGAGAAGGCATGGAATGAGGCATGTTCTTCAGGGGGTGTTCTTGTTGTCCCACAAGCTAAAATCTATCATTTGAAACCAATAACTTTTTCAGGACCATGCCAACCAACCACTGCCTTCAGGGTCTATGGAACAATCAAAGCATGGCCTGATATATCAGCATATGGAAAAGAAAGACTACTCTGGATCATGTTTCAAAATCTCACCAATCTCAGGGTTGATGGTGGTGGCATCATCAATGGAAATGGCAGAAAATGGTGGCAGAATTCTTGCAAAACCAATGAAAAACTTGCTGTGACATTCTATGGATGCAACAACCTGAAAGTGACAAACCTGAGATTCAAAAATGCACAACAAATGCATGTAAGGTTTCAAAAGTGCAACAATGTGACGGCTTCGAATTTGATCCTGAGAGCACCAGGAAACAGTCCCAACACTGATGGAATTCACGTCACACAGACAAACAATATTATCATAAGCAATAGCTCCATTGGGACAGGTGATGACTGCATTTCAATAGTGAGTGGGTCCGAGAATGTTCGAGTCATAGATGTTAAGTGTGGACCAGGGCATGGAATCAGCATTGGAAGCTTAGGGGCTGGTAACTCAGAAGCTCAAGTGTCCAATGTGTTAGTGAACAGAGCCACCATAAGAGGAACCACTAATGGAGTTAGAATAAAGACTTGGCAGGGAGGTTCTGGATATGCGAGAAACATAAAATTTGAGAATATAGTAATGAGAAATGTGACAAATCCGATAATTGTAGATCAAAACTACTGTGACCAGGAGAAGCCATGCAAAGAGAAGGTCTCAGCAGTGCAACTGAGTAACATTGTGTACGAAAACATCAGAGGAACAAGTGCTTCGGAACAAAAGTTTCCCATGCAAAGGAATATTCTTGCAAGATGTGATCTTAACACGACATAG 1185 0.4093 MSQKSVVVLSVFITMIVSSGVCFASFLEDTYHLTNYQHYSVKPNNEHFGNIMRRAYGSNPSARSQTMISVDDHGAKANDGRDDTKAFEKAWNEACSSGGVLVVPQAKIYHLKPITFSGPCQPTTAFRVYGTIKAWPDISAYGKERLLWIMFQNLTNLRVDGGGIINGNGRKWWQNSCKTNEKLAVTFYGCNNLKVTNLRFKNAQQMHVRFQKCNNVTASNLILRAPGNSPNTDGIHVTQTNNIIISNSSIGTGDDCISIVSGSENVRVIDVKCGPGHGISIGSLGAGNSEAQVSNVLVNRATIRGTTNGVRIKTWQGGSGYARNIKFENIVMRNVTNPIIVDQNYCDQEKPCKEKVSAVQLSNIVYENIRGTSASEQKFPMQRNILARCDLNTT 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02092 394 FunFam Polygalacturonase QRT2 53 390 - -
Vimu4g02092 394 SMART pbh1 240 261 IPR006626 -
Vimu4g02092 394 SMART pbh1 293 314 IPR006626 -
Vimu4g02092 394 SMART pbh1 213 239 IPR006626 -
Vimu4g02092 394 SMART pbh1 263 283 IPR006626 -
Vimu4g02092 394 SMART pbh1 322 343 IPR006626 -
Vimu4g02092 394 Pfam Glycosyl hydrolases family 28 101 379 IPR000743 GO:0004650|GO:0005975
Vimu4g02092 394 SUPERFAMILY Pectin lyase-like 63 375 IPR011050 -
Vimu4g02092 394 Gene3D - 55 390 IPR012334 -
Vimu4g02092 394 PANTHER - 66 381 - -
Vimu4g02092 394 ProSitePatterns Polygalacturonase active site. 270 283 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02092 Vimu-Chr4 23245285 23248517 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02092 4 23245285 23248517 Vimu4g02092 4 23245285 23248517 ECH
Vimu5g02715 5 36920665 36923439 Vimu4g02092 4 23245285 23248517 PCT
Vimu5g00197 5 1779063 1780756 Vimu4g02092 4 23245285 23248517 PCT