Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02037 ATGAAGCGCGTTCAAAGATTTCTCTATGAACATCAAAGTTCTATGGTCGAGGAGCAGTTGGCAGACATAGCTATTCCAATGTCTGTTCAACGAGAACATCATAGTACCAATGACATATCAGGATCAGGATCAGGATCTTGTCTTTATGATCTGTTTTGTTCAGAAACACCTAATATCAATGCTCACAATCTAAGAGAACGATGGATGTCTTCTGGACCGCAGAAAAGATTAGACAATTTGATGCGTCAAGCTGGGAACAGGTATTGTGCTGATTGTGGATCATTAGAGCCAAAATGGGTGTCTACAAGCCTTGGAGTTTTTATTTGCATCAAATGCTCTGGAGTACATAGAAGCCTCGGTGTCCATATATCCAAGGTTCTGTCCCTAAAGCTAGATGAATGGACAGATGAACAAGTTGATGAATTGGTGAAATTGGGTGGAAATACAGTAGTGAACAAGAAGTATGAAGCTTACCTGCCAAGTAACATAAGAAAACCAAAACCTAATTCTTCCATTGAAGAACGATCTGATTTCATCAGGAGAAAATATGAGTTTCTGCAGTTTATGGATTCTGAGGAGAACATGTCTTGCCCCTTCATACCATCCAATTCAGGAAGTTCATCAGATTCTCAAATTGGTTCCTCAAGACTTCAGTCCATACGAGAAAAAAAACAGTATTCTGATAATAAACAACCGACTAAACATCGTATTTGCAGAACATTTCGAAATAGTCGAGGAAGAAAAGAAACTCATGACTTTAGGACTTCAAAGAATAGCACTTCATTGGCAGGTATGACTGAATTTGTTGGGTTGATAAAGGTGAACGTGGTTAAAGGAATTAATCTTGCTGTTCGTGATTCAGTGAAGACTCGTGTCATAAAGAACAATTTAAACCCAATTTGGAATGAAAGCCTAATGTTGTCAATTCCTGATAATATTCCTCCTCTTAAAATTATTGTGTATGATAAAGATACTTTCTCCACTGATGATTTTATGGGTGAGGCTGAAATAGACATTCAACCTTTGGTCTCAGCTGCAACAGAATATGAAAAATCTTCAGTCGATAATATCATGCAGATTGAAAAAATGGTAGCAAGTGGTGACAACACTCTTATCAAAGATGGCATAATCTCCCTTGAAGATGGCAAAATCAAACAAGAGGTCTCAGTGAGACTGCAACATGTTGAGAGAGGTGTGTTAGAGATTGAACTTGAATGTGTTCCTTTAACTCAGTAA 1236 0.3786 MKRVQRFLYEHQSSMVEEQLADIAIPMSVQREHHSTNDISGSGSGSCLYDLFCSETPNINAHNLRERWMSSGPQKRLDNLMRQAGNRYCADCGSLEPKWVSTSLGVFICIKCSGVHRSLGVHISKVLSLKLDEWTDEQVDELVKLGGNTVVNKKYEAYLPSNIRKPKPNSSIEERSDFIRRKYEFLQFMDSEENMSCPFIPSNSGSSSDSQIGSSRLQSIREKKQYSDNKQPTKHRICRTFRNSRGRKETHDFRTSKNSTSLAGMTEFVGLIKVNVVKGINLAVRDSVKTRVIKNNLNPIWNESLMLSIPDNIPPLKIIVYDKDTFSTDDFMGEAEIDIQPLVSAATEYEKSSVDNIMQIEKMVASGDNTLIKDGIISLEDGKIKQEVSVRLQHVERGVLEIELECVPLTQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02037 411 Gene3D Arf GTPase activating protein 58 197 IPR038508 -
Vimu4g02037 411 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 69 411 IPR044518 GO:0005096|GO:0005543
Vimu4g02037 411 MobiDBLite consensus disorder prediction 199 234 - -
Vimu4g02037 411 Pfam Putative GTPase activating protein for Arf 75 190 IPR001164 GO:0005096
Vimu4g02037 411 CDD ArfGap 77 183 - -
Vimu4g02037 411 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 268 347 IPR035892 -
Vimu4g02037 411 PRINTS HIV Rev interacting protein signature 105 122 IPR001164 GO:0005096
Vimu4g02037 411 PRINTS HIV Rev interacting protein signature 126 147 IPR001164 GO:0005096
Vimu4g02037 411 PRINTS HIV Rev interacting protein signature 86 105 IPR001164 GO:0005096
Vimu4g02037 411 ProSiteProfiles C2 domain profile. 216 353 IPR000008 -
Vimu4g02037 411 Pfam C2 domain 285 345 IPR000008 -
Vimu4g02037 411 ProSiteProfiles ARF GTPase-activating proteins domain profile. 74 196 IPR001164 GO:0005096
Vimu4g02037 411 Gene3D C2 domain 269 410 IPR035892 -
Vimu4g02037 411 SMART arf_gap_3 75 196 IPR001164 GO:0005096
Vimu4g02037 411 SMART C2_3c 271 351 IPR000008 -
Vimu4g02037 411 MobiDBLite consensus disorder prediction 199 220 - -
Vimu4g02037 411 FunFam stromal membrane-associated protein 1 isoform X1 60 194 - -
Vimu4g02037 411 SUPERFAMILY ArfGap/RecO-like zinc finger 74 190 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02037 Vimu-Chr4 22679423 22685392 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02037 4 22679423 22685392 Vimu5g00190 5 1714128 1719892 PCT