Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02036 ATGTCAGCATCATCATTGATAGAGTCTCTAGTTCTTCAACTCCATGAGATTTCAGCTGTCAAATTTGGCAACTTTAAGCTCAAATCTGGCATCTTCTCACCAATCTACATAGACCTACGCCTCATCATATCTTACCCTTCTCTCCTCCAGAAAATCTCTCAAACCCTTATTTCCTCTGTCTCTTCCACTTCCTATGATCTTGTATGTGGTGTCCCTTACACTGCCTTACCAATTGCTACATGTGTCTCCCTTGCCCAAAACATTCCCATGGTCATGCGCCGCAAGGAAATCAAAGATTATGGCACTGCTAAAGCTATTGAAGGTGATTTCAAGGCTGGCCAAAGTTGCTTGATAGTTGAGGATTTGGTTACAAGCGGCACATCGGTTTTGGAAACAGCGGCACCACTACGTGCTTCTGGGTTGAAGATCAGTGATGCTGTTGTCTTGATTGATAGAGAGCAAGGAGGGAGAGAAAATTTGGAGGAGAATGGCATCAAGCTGCATGCAATTATTAAATTAACGGATATGGTGAAAATTTTGAGCAACCATGGGAAACTTGACGAGGAGATGGTAGGGGTTGTTACAAAGTTCTTAGAGGAGAATCGGAAGGTTGCGGCTGTGGCAAAGGTGGAGAAGCCTGCAACAAAGGTCAAGGCTTTGCCATTTGAGGAGAGGGCTAGTCTCTCAAAGAATCCAATGGGAAAGAGGTTGTTTGAGATCATGGCTGCCAAGACGAGTAATTTGTGTCTGGCTGCCGATGTTGGAACTGCAGCTGAATTGCTTGAAATTGCTGAGAAGGTTGGACCTGAGATTTGCCTGCTGAAGACTCATGTGGATATTTTTCCAGATTTTACTCCTGAATTTGGTTCAAAGCTTCTCTCGATTGCAGAAAAACATAACTTCTTGATCTTTGAGGATCGTAAATTTGCTGATATTGGTAACACAGTGACCATGCAGTATGCAGGAGGTATCTTTCAAATATTGGATTGGGCTCATATAGTGAATGCTCACATAATCTCAGGTCCTGGAATTGTTGATGGATTAAAATTGAAGGGTTTACCTCGTGGCAGGGGTCTGTTACTGCTTGCTGAAATGAGTTCAGCAGGTAACTTTGCCAAGGGAGATTATACTGCAGCTGCAGTAAAAATTGCCGAGGATCATTCTGATTTTGTAATTGGCTTCATATCAGTCAATCCTGCATCATGGCCAGGAGCACCTATAAATCCCTCTTTCATTCAGGCAACCCCTGGAGTTCAAATGGTAACTGGTGGTGATGCTTTAGGCCAGCAATACAACACTCCATACTCTGTGGTTCATGATAGGGGCAGTGACATAATAATTGTGGGACGTGGCATAATCAAAGCAGCAAATCCTGCTGAGGCAGCTCGTGAATACCGACTTGAAGGGTGGAAAGCATATTTGGCAAAGTGTTCTTGA 1437 0.4363 MSASSLIESLVLQLHEISAVKFGNFKLKSGIFSPIYIDLRLIISYPSLLQKISQTLISSVSSTSYDLVCGVPYTALPIATCVSLAQNIPMVMRRKEIKDYGTAKAIEGDFKAGQSCLIVEDLVTSGTSVLETAAPLRASGLKISDAVVLIDREQGGRENLEENGIKLHAIIKLTDMVKILSNHGKLDEEMVGVVTKFLEENRKVAAVAKVEKPATKVKALPFEERASLSKNPMGKRLFEIMAAKTSNLCLAADVGTAAELLEIAEKVGPEICLLKTHVDIFPDFTPEFGSKLLSIAEKHNFLIFEDRKFADIGNTVTMQYAGGIFQILDWAHIVNAHIISGPGIVDGLKLKGLPRGRGLLLLAEMSSAGNFAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAPINPSFIQATPGVQMVTGGDALGQQYNTPYSVVHDRGSDIIIVGRGIIKAANPAEAAREYRLEGWKAYLAKCS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02036 478 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 246 465 IPR001754 GO:0004590|GO:0006207
Vimu4g02036 478 CDD OMP_decarboxylase_like 248 465 - -
Vimu4g02036 478 NCBIfam orotidine-5'-phosphate decarboxylase 248 466 IPR014732 GO:0004590|GO:0044205
Vimu4g02036 478 SUPERFAMILY Ribulose-phoshate binding barrel 220 474 IPR011060 -
Vimu4g02036 478 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 303 316 IPR018089 GO:0004590|GO:0006207
Vimu4g02036 478 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 234 IPR023031 GO:0004588|GO:0006221
Vimu4g02036 478 Pfam Phosphoribosyl transferase domain 57 158 IPR000836 -
Vimu4g02036 478 Gene3D Aldolase class I 216 478 IPR013785 -
Vimu4g02036 478 FunFam Uridine monophosphate synthetase 217 478 - -
Vimu4g02036 478 CDD PRTases_typeI 66 172 IPR000836 -
Vimu4g02036 478 NCBIfam orotate phosphoribosyltransferase 14 175 IPR004467 GO:0004588
Vimu4g02036 478 SUPERFAMILY PRTase-like 6 194 IPR029057 -
Vimu4g02036 478 SMART OMPdecase_2 247 465 IPR001754 GO:0004590|GO:0006207
Vimu4g02036 478 FunFam Uridine monophosphate synthetase 3 207 - -
Vimu4g02036 478 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 4 477 - -
Vimu4g02036 478 Gene3D - 2 212 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02036 Vimu-Chr4 22662876 22665218 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02036 4 22662876 22665218 Vimu4g02036 4 22662876 22665218 ECH
Vimu4g02036 4 22662876 22665218 Vimu5g00189 5 1709278 1711888 PCT