Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02034 ATGGCATCTAGTCATCCATTCTTTGATGATATCTGGAGCAGATCCAGCGTCGATCCTCCTCAAACGGAAGAGCCAACTGAAGTCGGTGAACTTGTGAATGAGCCTCTGCAGACTGCCCTTAAACCTCATGGGACTGTTACAAGCAGTGTTCGTGAGCTGTTAGAGTGCCCTGTGTGTTTAAATGCTATGTACCCTCCAATCCACCAGTGTTCAAATGGTCACACTTTATGCTCTGGTTGCAAACCCAGAGTCCATGATCGGTGCCCTACATGTAGGCACGAGCTTGGCAATATCAGATGTCTGGCACTGGAAAAGGTGGCTGCATCATTAGAACTTCCTTGTAAATATCAAGGTTTTGGGTGCATGGGCATATACCCATATTACAGCAAGCTAAAGCATGAATCTCAATGTGCATTTAGACCTTATAATTGCCCATATGCTGGTTCAGAATGTTCAGTTATGGGTGATATACCTTACCTTGTGACCCATCTGAAAGATGATCATAAAGTGGACATGCACAATGGTTGTACTTTCAATCACCGTTATGTCAAAACAAATCCACAAGAAGTCGAAAATGCCACGTGGATGTTAACGGTTTTCAGTTGCTTTGGTCAGTATTTCTGTCTACACTTTGAAGCTTTTCAGCTAGGAATGGCTCCTGTCTACATCGCTTTTTTGCGTTTCATGGGGGACGACAATGAGGCGAAGAACTACACATACAGTCTGGAGGTGGGTGGAAATGGGAGGAAGATGATTTGGCAAGGGGTGCCCAGAAGCATTAGGGATAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAGCATGGCTCTATTCTTTTCTGGGGGTGACAAGAAGGAACTGAAACTACGAGTCACTGGGAGAATTTGGAAAGAGCAGTGA 915 0.4514 MASSHPFFDDIWSRSSVDPPQTEEPTEVGELVNEPLQTALKPHGTVTSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCMGIYPYYSKLKHESQCAFRPYNCPYAGSECSVMGDIPYLVTHLKDDHKVDMHNGCTFNHRYVKTNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRSMALFFSGGDKKELKLRVTGRIWKEQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02034 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 165 297 - -
Vimu4g02034 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vimu4g02034 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 107 IPR013083 -
Vimu4g02034 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 163 297 IPR008974 GO:0005515
Vimu4g02034 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 303 - -
Vimu4g02034 304 CDD RING-HC_SIAHs 54 92 - -
Vimu4g02034 304 SUPERFAMILY TRAF domain-like 109 301 - -
Vimu4g02034 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 14 107 - -
Vimu4g02034 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Vimu4g02034 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 162 IPR013083 -
Vimu4g02034 304 MobiDBLite consensus disorder prediction 1 25 - -
Vimu4g02034 304 SUPERFAMILY RING/U-box 48 96 - -
Vimu4g02034 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Vimu4g02034 304 CDD Sina 170 298 - -
Vimu4g02034 304 FunFam E3 ubiquitin-protein ligase SINAT3 108 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02034 Vimu-Chr4 22644790 22647246 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02034 4 22644790 22647246 Vimu4g02034 4 22644790 22647246 ECH
Vimu4g02034 4 22644790 22647246 Vimu5g00188 5 1704666 1708249 PCT