Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02020 ATGGCTACTCTTGTTCTTCACCATCAAACTTCTCCTGCTCAAGATGCCGAAGCTCTTCATCAAGCTTTCAAAGGATGGGGTTCTGATGGCAAGGCCATTATAGCTATACTGGGTCACAGAAATGTTCATCAGAGAGAGGAAATCAAAAAGGCTTATGAAGAGATTTACCAAGAGAATCTCATCAAACGCCTTGAGTCAGAGATCTCTGGTGATTTTGAGAGAGCTGTGTATCGGTGGATGTTGGAGCCTGCAGATCGTGATGCTGTTTTGATGAATGTAGCAATAAAAAATGGTCCAAAAGAGTATAATGTGATTGCAGAGATTGCTAGTGTTCTTTCAGCTAAAGAACTCTTAGCAGTGAGGAGTGCCTATCATGATCGCTACAAACGTTCTCTGGAAGAAGATGTGGCAGCACACACCACTGGTCATCTTCGTCAGGCAAGTCATTTTCATACAAATAATTTGAGTCTTTTGGTTGGGTTGGTGAGCTCATATAGGTACGAGGGTGATGAGATCAATGAAAAATTGGCACAAACTGAAGCTAATATTCTTCATGAATCAATCAAGGAGAAGAAAGCCAACTATGAAGAAGTTATAAGAATTCTCACCACAAGAAGCAAAACTCAACTTGTTGCAACTTTCAACCGCTATAGAGATGAACATGGAATTTCCATTAGTAAGAAATTGGTTGATCAGTCATCTGATGATTTTGTCAAAGTATTGCACACAGTGATTCGTGGCATCAATGACCACAAAAAGTACTATGAGAAGGTTTTACGCAATGCAATAAAAAAGTTTGGAACTGATGAGGATGGGTTGACTCGTGTGATTGTAACAAGGGCTGAGAAAGATTTGAAGGACATCAAAGAGGTGTACTACAAGAGGAACAGTGTTCATCTTGAAGATGCTGTGTCCAAGGAAATCTCAGGAGACTACAAGAGGTTCATCCTTGCACTGCTGGGAAAGCAAGACTAA 975 0.4051 MATLVLHHQTSPAQDAEALHQAFKGWGSDGKAIIAILGHRNVHQREEIKKAYEEIYQENLIKRLESEISGDFERAVYRWMLEPADRDAVLMNVAIKNGPKEYNVIAEIASVLSAKELLAVRSAYHDRYKRSLEEDVAAHTTGHLRQASHFHTNNLSLLVGLVSSYRYEGDEINEKLAQTEANILHESIKEKKANYEEVIRILTTRSKTQLVATFNRYRDEHGISISKKLVDQSSDDFVKVLHTVIRGINDHKKYYEKVLRNAIKKFGTDEDGLTRVIVTRAEKDLKDIKEVYYKRNSVHLEDAVSKEISGDYKRFILALLGKQD 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02020 324 Pfam Annexin 87 147 IPR018502 GO:0005509|GO:0005544
Vimu4g02020 324 Pfam Annexin 14 76 IPR018502 GO:0005509|GO:0005544
Vimu4g02020 324 Pfam Annexin 257 319 IPR018502 GO:0005509|GO:0005544
Vimu4g02020 324 Pfam Annexin 181 242 IPR018502 GO:0005509|GO:0005544
Vimu4g02020 324 Gene3D Annexin 252 322 IPR037104 GO:0005509|GO:0005544
Vimu4g02020 324 PRINTS Plant annexin signature 118 132 IPR009118 -
Vimu4g02020 324 PRINTS Plant annexin signature 235 253 IPR009118 -
Vimu4g02020 324 Gene3D Annexin 2 81 IPR037104 GO:0005509|GO:0005544
Vimu4g02020 324 PRINTS Annexin family signature 24 46 IPR001464 GO:0005509|GO:0005544
Vimu4g02020 324 PRINTS Annexin family signature 183 209 IPR001464 GO:0005509|GO:0005544
Vimu4g02020 324 PRINTS Annexin family signature 263 283 IPR001464 GO:0005509|GO:0005544
Vimu4g02020 324 PRINTS Annexin family signature 64 80 IPR001464 GO:0005509|GO:0005544
Vimu4g02020 324 PRINTS Annexin family signature 307 320 IPR001464 GO:0005509|GO:0005544
Vimu4g02020 324 ProSiteProfiles Annexin repeat profile. 10 81 IPR018502 GO:0005509|GO:0005544
Vimu4g02020 324 SMART annex3 98 161 IPR018502 GO:0005509|GO:0005544
Vimu4g02020 324 SMART annex3 27 79 IPR018502 GO:0005509|GO:0005544
Vimu4g02020 324 SMART annex3 267 319 IPR018502 GO:0005509|GO:0005544
Vimu4g02020 324 SMART annex3 194 244 IPR018502 GO:0005509|GO:0005544
Vimu4g02020 324 SUPERFAMILY Annexin 3 322 IPR037104 GO:0005509|GO:0005544
Vimu4g02020 324 ProSiteProfiles Annexin repeat profile. 175 246 IPR018502 GO:0005509|GO:0005544
Vimu4g02020 324 FunFam Annexin 175 249 - -
Vimu4g02020 324 ProSitePatterns Annexin repeat signature. 267 319 IPR018252 GO:0005509|GO:0005544
Vimu4g02020 324 FunFam Annexin 251 322 - -
Vimu4g02020 324 FunFam Annexin 1 81 - -
Vimu4g02020 324 PANTHER ANNEXIN 12 319 - -
Vimu4g02020 324 Gene3D Annexin 82 148 IPR037104 GO:0005509|GO:0005544
Vimu4g02020 324 ProSiteProfiles Annexin repeat profile. 250 321 IPR018502 GO:0005509|GO:0005544
Vimu4g02020 324 Gene3D Annexin 175 248 IPR037104 GO:0005509|GO:0005544
Vimu4g02020 324 ProSiteProfiles Annexin repeat profile. 82 163 IPR018502 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02020 Vimu-Chr4 22546505 22549398 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02020 4 22546505 22549398 Vimu4g02020 4 22546505 22549398 ECH
Vimu4g02020 4 22546505 22549398 Vimu5g00163 5 1347366 1350434 PCT