Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02019 ATGGCTACATTGGTTGCTCCTCCCAACCACTCTCCTGTGGAAGATGCAGAATCTCTGAGGAAGGCTGTGAAAGGTTGGGGAGCTGATGGAAAAGCCATTATATCAATACTAGGCCATAGAAATGCTGCACAGAGGACCCAAATCAGAGAGGCATACCAGAATCTCTTCCAAGAGGATCTCATCAAACGCCTTGAGTCCGAGCTCTCTGGTGACTTTGAGAGAGCAATGTATCGTTGGATATTGGAACCTGCAGAACGTGAGGCTTTGTTGGCGAATATAGCCCTTAAGAGGGATGAAAAAAGCTACCAAGTGATTGTGGAAATTTCCTGTGTTCTTTCACCCCAAGAGCTTTTTGCTGTGAGATGTGCCTACCACAACAGGTTCAAACGTTCCATGGAGGAAGATGTGGCTGCTAATACCACTGGCCACCTTCGTCAGCTGTTGGTAGGGTTGGTGAGCTCATTTAGGTATGGTGGCAGTGAGATTAATGCACGATTGGCACAATCTGAAGCTGATGCACTTCATGAGGCTATCAAAAACAAGAACAAAAGCAATGAAGAAATTATTAGGATCCTTACCACCAGGAGCAAGACACAACTTGTGGCCACTTTCAACCGTTACAGGGATGATCATGGCATTGCCATTACAAAGAAACTGTCCGATGAAGGGTCTGATGAGTTTCATATGGCAGCCAATTTAGCTATTAGTTGCATCAATGATCATAAGAAGTACTATGAAAAGGTTCTGAGAAATGCCATGGAAAGTGTTGGAAGTGATGAGGAAGCACTGACACGTGTGATTGTGACAAGGGCTGAGAAGGATCTGAAGGAGATCAAAGATGTGTATTACAAGAGAAACAGTGTTCATCTTGAGCATGTTGTTGCCAATGAAACTTCAGGAGACTACAAGAAGTTTCTGCTCACTCTGATGGGCAATGATGACTGA 945 0.4444 MATLVAPPNHSPVEDAESLRKAVKGWGADGKAIISILGHRNAAQRTQIREAYQNLFQEDLIKRLESELSGDFERAMYRWILEPAEREALLANIALKRDEKSYQVIVEISCVLSPQELFAVRCAYHNRFKRSMEEDVAANTTGHLRQLLVGLVSSFRYGGSEINARLAQSEADALHEAIKNKNKSNEEIIRILTTRSKTQLVATFNRYRDDHGIAITKKLSDEGSDEFHMAANLAISCINDHKKYYEKVLRNAMESVGSDEEALTRVIVTRAEKDLKEIKDVYYKRNSVHLEHVVANETSGDYKKFLLTLMGNDD 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02019 314 ProSiteProfiles Annexin repeat profile. 240 311 IPR018502 GO:0005509|GO:0005544
Vimu4g02019 314 PRINTS Plant annexin signature 118 132 IPR009118 -
Vimu4g02019 314 PRINTS Plant annexin signature 160 180 IPR009118 -
Vimu4g02019 314 PRINTS Plant annexin signature 225 243 IPR009118 -
Vimu4g02019 314 FunFam Annexin 1 81 - -
Vimu4g02019 314 PANTHER ANNEXIN 9 309 - -
Vimu4g02019 314 ProSitePatterns Annexin repeat signature. 257 309 IPR018252 GO:0005509|GO:0005544
Vimu4g02019 314 FunFam Annexin 165 239 - -
Vimu4g02019 314 Gene3D Annexin 1 81 IPR037104 GO:0005509|GO:0005544
Vimu4g02019 314 Gene3D Annexin 241 314 IPR037104 GO:0005509|GO:0005544
Vimu4g02019 314 ProSiteProfiles Annexin repeat profile. 82 153 IPR018502 GO:0005509|GO:0005544
Vimu4g02019 314 FunFam Annexin 241 312 - -
Vimu4g02019 314 SUPERFAMILY Annexin 3 314 IPR037104 GO:0005509|GO:0005544
Vimu4g02019 314 ProSiteProfiles Annexin repeat profile. 165 239 IPR018502 GO:0005509|GO:0005544
Vimu4g02019 314 Gene3D Annexin 165 235 IPR037104 GO:0005509|GO:0005544
Vimu4g02019 314 ProSiteProfiles Annexin repeat profile. 10 81 IPR018502 GO:0005509|GO:0005544
Vimu4g02019 314 SMART annex3 27 79 IPR018502 GO:0005509|GO:0005544
Vimu4g02019 314 SMART annex3 257 309 IPR018502 GO:0005509|GO:0005544
Vimu4g02019 314 SMART annex3 99 151 IPR018502 GO:0005509|GO:0005544
Vimu4g02019 314 SMART annex3 182 235 IPR018502 GO:0005509|GO:0005544
Vimu4g02019 314 FunFam Annexin 82 152 - -
Vimu4g02019 314 Gene3D Annexin 82 152 IPR037104 GO:0005509|GO:0005544
Vimu4g02019 314 PRINTS Annexin family signature 297 310 IPR001464 GO:0005509|GO:0005544
Vimu4g02019 314 PRINTS Annexin family signature 64 80 IPR001464 GO:0005509|GO:0005544
Vimu4g02019 314 PRINTS Annexin family signature 24 46 IPR001464 GO:0005509|GO:0005544
Vimu4g02019 314 PRINTS Annexin family signature 253 273 IPR001464 GO:0005509|GO:0005544
Vimu4g02019 314 Pfam Annexin 90 151 IPR018502 GO:0005509|GO:0005544
Vimu4g02019 314 Pfam Annexin 170 228 IPR018502 GO:0005509|GO:0005544
Vimu4g02019 314 Pfam Annexin 15 76 IPR018502 GO:0005509|GO:0005544
Vimu4g02019 314 Pfam Annexin 247 309 IPR018502 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02019 Vimu-Chr4 22539986 22541905 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02019 4 22539986 22541905 Vimu4g02019 4 22539986 22541905 ECH
Vimu4g02019 4 22539986 22541905 Vimu5g00162 5 1335111 1337136 PCT