Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01757 ATGGAAGAAGTGTGGAGAAGGATTGCGATGGTGATGCTGATAATGGTTCTGATATGGGCATGGAGGATGCTGAATTGGTTATGGTTCACACCCAAGAGGCTTGAAAGGCTTCTAAGAGAGCAAGGTCTTCAAGGCAATCCATATACGCTTTTCTTTGGAGACACCAATGAATATGCGAAGATGAGAAAGGAAGCCTTCTCCAAACCCATGAATCTCTTCTCACACGACATAGTGCCGCGTGTGTTTACCTTTTTCCATCACAGTATCAACACACACGGCAAAAATTGTTTTATTTGGTTTGGATCAGTACCTAGGGTGACCCTCACTGATCCTGAGCTAATCAAAGATGTATTAAACAAGCCGCACGACTTCGTAAAGATTAAAACTAATCCACAAGTCAGGTTATTAGCTCCTGGTCTTGTAAGCCACGAGGGAGAAAAGTGGAGCAAGCACAGAAAGATAATCAATCCTGCTTTCAATTTAGAGAAGTTGAAGCATCTGTTGGTGTACAAGTATCATGATGTGAACTTGGAATATTTTAACATGGAAATTTTAACACTTAGTTGTTTCTGCATTGCACCTCAGAATATGTTACCACTATTCATCAAATGTTGTGATGATCTTATTAGCAAATGGGAGGAAATGTTATCTTTGGATGGATCAAGTGAAATGGACGTATGGCCTTTCCTTCAGAATTTGGCTAGTGACGCAATTTCTCGAACAGCATTTGGAAGTAGTTATGAAGAAGGAAGAAGAATATTTCAACTTATAAGAGAGCAAAGTGAACTTACCATGCAACTTATGTTGAAAGTTTACATCCCTGGATGGAGGTTTGTACCCACTGCTACCCATAGAAGGATGAAGGCAATTGACAGGGAAATAAAAGCTTCACTTATGGATATCATTAATAACAGAGAAAAAGCACTAAAGGCAGGTGAAGCCACTAAAAATGATTTGTTAGATATACTTCTGGAGTCAAATCATAAGGAAATTCAAGAACAGGGAAACAATAAGAATGTTGGAATGAATATTGAAGATGTTATTGGGGAATGCAAGCTATTTTACTTTGCAGGGCAGGAGACAACTTCATCTTTGCTTGTTTGGACAATGATATTATTGAGTATGTACCCTGATTGGCAAACACGTGCAAGGGAGGAAATCTTACAAGTTTTTTCCAATCGAAAACCAGATTTTGATGGATTGAATCACCTTAAGATTGTTACCATGATTTTGAATGAGGTTATCAGGCTATACGCACCGGTAATTGGTCTTGCTCGAAAAGTTCGTAAAGATGTGAAACTTGGAAATCTATCATTACCTGCAGGAGTGCAAGTTTCCTTGCCAATAATTTTGGTTCATCATGATTGTGAGCTCTGGGGTGATGATGCTAAAGAGTTCAAACCTGAGAGATTTGCTGAAGGAGTTCTAAAGGCCACAAATGGCAGAGCTTCACTGATTCCCTTTGGAGGTGGTCCTAGGATTTGCATTGGACAAAACTTCTCCTTGTTGGAAGCAAAGATTGCTTTGTCAATGATTTTACAACGTTTCTCGTTTGAACTCTCTCCCACCTATACCCATGCTCCAACAACTGTGCTTACTCTTCAACCCCAATATGGTGCTCAACTCATTCTACGTAACGTAGAAATATAA 1650 0.3939 MEEVWRRIAMVMLIMVLIWAWRMLNWLWFTPKRLERLLREQGLQGNPYTLFFGDTNEYAKMRKEAFSKPMNLFSHDIVPRVFTFFHHSINTHGKNCFIWFGSVPRVTLTDPELIKDVLNKPHDFVKIKTNPQVRLLAPGLVSHEGEKWSKHRKIINPAFNLEKLKHLLVYKYHDVNLEYFNMEILTLSCFCIAPQNMLPLFIKCCDDLISKWEEMLSLDGSSEMDVWPFLQNLASDAISRTAFGSSYEEGRRIFQLIREQSELTMQLMLKVYIPGWRFVPTATHRRMKAIDREIKASLMDIINNREKALKAGEATKNDLLDILLESNHKEIQEQGNNKNVGMNIEDVIGECKLFYFAGQETTSSLLVWTMILLSMYPDWQTRAREEILQVFSNRKPDFDGLNHLKIVTMILNEVIRLYAPVIGLARKVRKDVKLGNLSLPAGVQVSLPIILVHHDCELWGDDAKEFKPERFAEGVLKATNGRASLIPFGGGPRICIGQNFSLLEAKIALSMILQRFSFELSPTYTHAPTTVLTLQPQYGAQLILRNVEI 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01757 549 SUPERFAMILY Cytochrome P450 77 545 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01757 549 FunFam Cytochrome P450 734A1 183 548 - -
Vimu4g01757 549 Gene3D Cytochrome P450 70 547 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01757 549 CDD CYP72 82 543 - -
Vimu4g01757 549 Pfam Cytochrome P450 195 531 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01757 549 Pfam Cytochrome P450 82 164 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01757 549 PANTHER CYTOCHROME P450 FAMILY MEMBER 17 540 - -
Vimu4g01757 549 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 488 497 IPR017972 GO:0005506|GO:0016705
Vimu4g01757 549 PRINTS P450 superfamily signature 495 506 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01757 549 PRINTS P450 superfamily signature 486 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01757 549 PRINTS P450 superfamily signature 357 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01757 549 PRINTS P450 superfamily signature 409 420 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01757 549 PRINTS E-class P450 group I signature 346 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01757 549 PRINTS E-class P450 group I signature 366 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01757 549 PRINTS E-class P450 group I signature 89 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01757 549 PRINTS E-class P450 group I signature 495 518 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01757 549 PRINTS E-class P450 group I signature 485 495 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01757 549 PRINTS E-class P450 group I signature 233 251 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01757 Vimu-Chr4 19169434 19172469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01757 19 547 Cytochrome P450 AT3G14610 54.049 0.0 578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01757 4 19169434 19172469 Vimu4g01757 4 19169434 19172469 ECH
Vimu5g00596 5 6528652 6531314 Vimu4g01757 4 19169434 19172469 PCT